DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH5

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001331375.1 Gene:XTH5 / 831233 AraportID:AT5G13870 Length:293 Species:Arabidopsis thaliana


Alignment Length:236 Identity:47/236 - (19%)
Similarity:75/236 - (31%) Gaps:72/236 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 FSSKDFSFKYGRVEVRAKM---PRAQWVTPQIWLQPRRPIYGVDDY-----RSGQLRIAYTRPNG 332
            |.||. |:.:|...:..||   ..|..|| ..:|..:...:...|:     |:||..|..|    
plant    66 FQSKG-SYLFGHFSMHIKMVAGDSAGTVT-AFYLSSQNSEHDEIDFEFLGNRTGQPYILQT---- 124

  Fly   333 GNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSE------DWSDSFHNYTLEWTPRELRWLVDGKE 391
                                 |....|.||..:      |.|..:|:|::.|...::.:.||...
plant   125 ---------------------NVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVP 168

  Fly   392 WCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGLAPFDQEFYLTFGLSVGGFNEYQHEIKPW---- 452
            ..|       |..:...|...|..|.::..:.|...|.      ..:.||..:...|..|:    
plant   169 IRV-------FKNSKDVGVKFPFNQPMKIYSSLWNADD------WATRGGLEKTNWEKAPFVASY 220

  Fly   453 ------------NERAPQAQKAFWKEVKKIRDHWLDEGHMK 481
                        |.:..:.|...|.:.|:.:|  ||....|
plant   221 RGFHVDGCEASVNAKFCETQGKRWWDQKEFQD--LDANQYK 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 47/236 (20%)
XTH5NP_001331375.1 GH16_XET 30..287 CDD:185685 47/236 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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