DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP3 and XTH7

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_195494.1 Gene:XTH7 / 829936 AraportID:AT4G37800 Length:293 Species:Arabidopsis thaliana


Alignment Length:283 Identity:55/283 - (19%)
Similarity:82/283 - (28%) Gaps:100/283 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 ANTH-DCVRNGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKM---PRAQWVTPQIWLQPRRPI 312
            ::|| ..:..||.:...|.|.....|:||. .:.:|||.::.|:   ..|..||..........:
plant    43 SDTHITQIDGGRAIQLKLDPSSGCGFASKK-QYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSV 106

  Fly   313 YGVDDY-----RSGQLRIAYTRPNGGNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSE------D 366
            ....|:     ||||                         |.....|....|.|:..:      |
plant   107 RDELDFEFLGNRSGQ-------------------------PYTVQTNVFAHGKGDREQRVNLWFD 146

  Fly   367 WSDSFHNYTLEWTPRELRWLVD-------------------------------GKEWCVQGS-AK 399
            .|..||.|.:.|....:.:.||                               ..:|..:|. .|
plant   147 PSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEK 211

  Fly   400 GSFSETTAAGKSLPQAQKLEEGTGLAPFDQEFYLTF---GLSVGGFNEYQHEIKPWNERAPQAQK 461
            .::|.                    ||| ..:|..|   |..|.|..:.....|.|.|.:...|.
plant   212 INWSR--------------------APF-YAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYHQL 255

  Fly   462 AFWKEVKKIRDHWLDEGHMKIDY 484
            :   .|:.....|:...||..||
plant   256 S---PVEARSYRWVRVNHMVYDY 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 55/283 (19%)
XTH7NP_195494.1 GH16_XET 32..289 CDD:185685 55/283 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.