DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP3 and XTH19

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_194758.1 Gene:XTH19 / 829152 AraportID:AT4G30290 Length:277 Species:Arabidopsis thaliana


Alignment Length:250 Identity:52/250 - (20%)
Similarity:82/250 - (32%) Gaps:58/250 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 GQANTHDCVRNGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYG 314
            |:...||  ..|:.|:..|.....:.|.|.. .|.||:.||:.|:                    
plant    35 GRGKIHD--NQGKLLSLSLDKSSGSGFQSNQ-EFLYGKAEVQMKL-------------------- 76

  Fly   315 VDDYRSGQLRIAYTRPNGGNLDLYGAAVL--FADEPLRSVKNCLKPGTGNNSED---WSD---SF 371
            |....:|.:...|.:..|...|......|  .:..|.....|....|:|:..:.   |.|   :|
plant    77 VPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANF 141

  Fly   372 HNYTLEWTPRELRWLVDG---KEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGLAPFDQEFYL 433
            |.|.:.|.|:.:.:.|||   :|          |....:.|...|..|.:.....|  ::.|.:.
plant   142 HTYCITWNPQRIIFTVDGIPIRE----------FMNAESRGVPFPTKQPMRLYASL--WEAEHWA 194

  Fly   434 TFGLSVGGFNEYQHEIKPWNE--RAPQAQKAFW---KEVKKIRDHWLDEGHMKID 483
            |    .||..:......|:..  |....:...|   |.|......|..:   |:|
plant   195 T----RGGLEKTDWSKAPFTAYYRNYNVEGCVWVNGKSVCPANSQWFTQ---KLD 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 51/249 (20%)
XTH19NP_194758.1 GH16_XET 20..276 CDD:185685 51/249 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.