DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH18

DIOPT Version :10

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_194757.1 Gene:XTH18 / 829151 AraportID:AT4G30280 Length:282 Species:Arabidopsis thaliana


Alignment Length:207 Identity:44/207 - (21%)
Similarity:71/207 - (34%) Gaps:64/207 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 GQANTHDCVRNGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYG 314
            |:....|  |:|:.|:..|.....:.|.|.. .|.||:.||:.|:                    
plant    40 GRGKVRD--RDGKLLSLSLDKSSGSGFQSNQ-EFLYGKAEVQMKL-------------------- 81

  Fly   315 VDDYRSGQLRIAYTRPNG-----------GNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSED-- 366
            |....:|.:...|.:..|           |||         :..|.....|....|:|:..:.  
plant    82 VPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNL---------SGHPYTLHTNVYTKGSGDKEQQFH 137

  Fly   367 -WSD---SFHNYTLEWTPRELRWLVDG---KEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGL 424
             |.|   :||.|.:.|.|:.:.:.|||   :|          |..:.:.|...|..|.:.....|
plant   138 LWFDPTVNFHTYCITWNPQRIIFTVDGIPIRE----------FKNSESIGVPFPTKQPMRLYASL 192

  Fly   425 APFDQEFYLTFG 436
              ::.|.:.|.|
plant   193 --WEAEHWATRG 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:464924
GH16_beta_GRP 175..489 CDD:185688 44/207 (21%)
XTH18NP_194757.1 LamG 25..281 CDD:473984 44/207 (21%)
Blue background indicates that the domain is not in the aligned region.

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