DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH18

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_194757.1 Gene:XTH18 / 829151 AraportID:AT4G30280 Length:282 Species:Arabidopsis thaliana


Alignment Length:207 Identity:44/207 - (21%)
Similarity:71/207 - (34%) Gaps:64/207 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 GQANTHDCVRNGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYG 314
            |:....|  |:|:.|:..|.....:.|.|.. .|.||:.||:.|:                    
plant    40 GRGKVRD--RDGKLLSLSLDKSSGSGFQSNQ-EFLYGKAEVQMKL-------------------- 81

  Fly   315 VDDYRSGQLRIAYTRPNG-----------GNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSED-- 366
            |....:|.:...|.:..|           |||         :..|.....|....|:|:..:.  
plant    82 VPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNL---------SGHPYTLHTNVYTKGSGDKEQQFH 137

  Fly   367 -WSD---SFHNYTLEWTPRELRWLVDG---KEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGL 424
             |.|   :||.|.:.|.|:.:.:.|||   :|          |..:.:.|...|..|.:.....|
plant   138 LWFDPTVNFHTYCITWNPQRIIFTVDGIPIRE----------FKNSESIGVPFPTKQPMRLYASL 192

  Fly   425 APFDQEFYLTFG 436
              ::.|.:.|.|
plant   193 --WEAEHWATRG 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 44/207 (21%)
XTH18NP_194757.1 LamG 25..281 CDD:419873 44/207 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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