DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH26

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_194614.1 Gene:XTH26 / 829006 AraportID:AT4G28850 Length:292 Species:Arabidopsis thaliana


Alignment Length:267 Identity:58/267 - (21%)
Similarity:90/267 - (33%) Gaps:77/267 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 NGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSGQLR 324
            ||..|...|.....:...|| .:..:|.||:..|:                    |....:|.:.
plant    45 NGTNLRLVLDKSAGSAIKSK-VAHLFGSVEMLIKL--------------------VPGNSAGTVA 88

  Fly   325 IAYTRPNGG-----NLDLYGAAVLFADEPLRSVKNCLKPGTGNNSED---W---SDSFHNYTLEW 378
            ..|....|.     :.:..|.|   ..:|.....|....|.||..:.   |   ::.|||||:.|
plant    89 AYYLSSTGSTHDEIDFEFLGNA---TGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHW 150

  Fly   379 TPRELRWLVDGKEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGLAPFDQEFYLTFGLSVGGFN 443
            .|.|:.|.|||....|       |....:.|.:.|..|.::....|  ::.|.:.|    .||..
plant   151 NPSEVVWFVDGTPIRV-------FRNYESEGIAYPNKQGMKVFASL--WNAEDWAT----QGGRV 202

  Fly   444 EYQHEIKPW--NERAPQAQKAFWK---EVKK-----IRDHW-------------------LDEGH 479
            :....:.|:  ..|..:|:...||   .:|:     ||.:|                   :.:|.
plant   203 KTNWTLAPFVAEGRRYKARACLWKGSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGF 267

  Fly   480 MKIDYVK 486
            |..||.|
plant   268 MIYDYCK 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 58/267 (22%)
XTH26NP_194614.1 PLN03161 1..292 CDD:178706 58/267 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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