DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTR6

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_194311.1 Gene:XTR6 / 828686 AraportID:AT4G25810 Length:286 Species:Arabidopsis thaliana


Alignment Length:257 Identity:50/257 - (19%)
Similarity:89/257 - (34%) Gaps:64/257 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 NGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSGQLR 324
            ||..|...|.....:.|.||: .:.:|:::::.|:                    |....:|.:.
plant    44 NGDLLTLSLDKASGSGFQSKN-EYLFGKIDMQIKL--------------------VAGNSAGTVT 87

  Fly   325 IAYTRPNGGNLDLYGAAVL--FADEPLRSVKNCLKPGTGNNSED---WSD---SFHNYTLEWTPR 381
            ..|.:..|...|......|  .:.:|.....|....|.|:..:.   |.|   .||.|::.|.|:
plant    88 AYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQ 152

  Fly   382 ELRWLVDGKEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGLAPFDQEFYLT------------ 434
            .:.:.||       |:....|....:.|...|:.|.:...:.|  ::.|.:.|            
plant   153 RIIFSVD-------GTPIREFKNMESQGTLFPKNQPMRMYSSL--WNAEEWATRGGLVKTDWSKA 208

  Fly   435 -FGLSVGGFNEYQHEIKPWNERAP----QAQKAFW--KEV-----KKIRDHWLDEGHMKIDY 484
             |..|..||||....:.......|    |.....|  :|:     :::|  |:...:|..:|
plant   209 PFTASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMR--WVQNNYMIYNY 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 50/257 (19%)
XTR6NP_194311.1 GH16_XET 22..283 CDD:185685 50/257 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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