DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH9

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_192230.1 Gene:XTH9 / 828024 AraportID:AT4G03210 Length:290 Species:Arabidopsis thaliana


Alignment Length:261 Identity:61/261 - (23%)
Similarity:93/261 - (35%) Gaps:65/261 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 CVRNGRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSG 321
            ||..|......|.....|.|.|:. .:.:|:|.::.|:                    |:...:|
plant    42 CVNEGEVTKLKLDNYSGAGFESRS-KYLFGKVSIQIKL--------------------VEGDSAG 85

  Fly   322 QLRIAYTRPNGGNLDLYGAAVL--FADEPLRSVKNCLKPGTGNNSED---WSD---SFHNYTLEW 378
            .:...|...:|.|.:.:....|  ...||.....|....|.||..:.   |.|   .||.|::.|
plant    86 TVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILW 150

  Fly   379 TPRELRWLVDGKEWCVQGS--AKG-SFSETTAAG--KSLPQAQKLEEGTGL-------APFDQEF 431
            :.|.:.::||.....||.:  .|| .|::..|.|  .|:..|.......||       |||    
plant   151 SKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPF---- 211

  Fly   432 YLTFGLSVGGFNEYQ---HEIKPWNE--RAPQAQKAFWKE--VKKIRDH------WLDEGHMKID 483
                   |..:.|:|   .||....:  :....||.:|.|  |.::..|      |:...||..|
plant   212 -------VASYKEFQIDACEIPTTTDLSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYD 269

  Fly   484 Y 484
            |
plant   270 Y 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 61/261 (23%)
XTH9NP_192230.1 GH16_XET 25..284 CDD:185685 61/261 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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