DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH29

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_193634.1 Gene:XTH29 / 827635 AraportID:AT4G18990 Length:357 Species:Arabidopsis thaliana


Alignment Length:94 Identity:23/94 - (24%)
Similarity:36/94 - (38%) Gaps:33/94 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 YRSGQLRIAYTRPNG---------------GNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSED- 366
            |.:| :.:|:...||               |||:         .:|.|...|....|:.|...: 
plant    95 YTAG-IVVAFYTSNGDVFVKDHDELDIEFLGNLE---------GKPWRFQTNMYGNGSTNRGREE 149

  Fly   367 ----WSD---SFHNYTLEWTPRELRWLVD 388
                |.|   .||.|::.|||.::.:.||
plant   150 RYRLWFDPSKEFHRYSILWTPTKIIFWVD 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 23/94 (24%)
XTH29NP_193634.1 LamG 40..312 CDD:304605 23/94 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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