DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH15

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_193149.2 Gene:XTH15 / 827051 AraportID:AT4G14130 Length:289 Species:Arabidopsis thaliana


Alignment Length:270 Identity:52/270 - (19%)
Similarity:85/270 - (31%) Gaps:87/270 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 GRTLNDGLPPMVTAQFSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSGQLRI 325
            |..|:..|..:..:.|.||. .:.:||::::.|:                    |....:|.:..
plant    47 GNMLSLSLDQVSGSGFKSKK-EYLFGRIDMQLKL--------------------VAGNSAGTVTA 90

  Fly   326 AYTRPNGGNLDLYGAAVLFAD--EPLRSVKNCLKPGTGNNSED---WSD---SFHNYTLEWTPRE 382
            .|....|...|......|..:  :|.....|....|.|:..:.   |.|   :||.|::.|.|:.
plant    91 YYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQH 155

  Fly   383 LRWLVDGKEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGL-------------------APF- 427
            :.:|||.....|       |:.....|...|::|.:...:.|                   ||| 
plant   156 IIFLVDNLPIRV-------FNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFT 213

  Fly   428 -----------------DQEFYLTFG---LSVG-GFNEYQHEIKPWNER----------APQAQK 461
                             |.:|..:||   |.|. ..|.|......|.::          ..:..:
plant   214 AYYRGFNAAACTASSGCDPKFKSSFGDGKLQVATELNAYGRRRLRWVQKYFMIYNYCSDLKRFPR 278

  Fly   462 AFWKEVKKIR 471
            .|..|.||.|
plant   279 GFPPECKKSR 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 52/270 (19%)
XTH15NP_193149.2 GH16_XET 23..284 CDD:185685 48/264 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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