DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH3

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_189141.1 Gene:XTH3 / 822096 AraportID:AT3G25050 Length:290 Species:Arabidopsis thaliana


Alignment Length:256 Identity:45/256 - (17%)
Similarity:74/256 - (28%) Gaps:96/256 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 FSSKDFSFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSGQLRIAYTRPNGGNLDLYGA 340
            |.||| ::..|..|:|.|:|...                    ..|.:...|....||..|....
plant    69 FESKD-AYGSGLFEMRIKVPSGN--------------------TGGIVTAFYLTSKGGGHDEIDF 112

  Fly   341 AVLFAD--EPLRSVKNCLKPGTGNNSED---W---SDSFHNYTLEWTPRELRWLVD--------- 388
            ..|..:  :|:....|....|.||..|.   |   :..:|.|.|.|.|.::.:.||         
plant   113 EFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN 177

  Fly   389 -------------------GKEWCVQGSAKGSFSETTAAGKSLPQAQKLEEGTGLAPFDQEF--Y 432
                               |.:|...|.                   :.:.....:||...|  :
plant   178 ENGVSYPSKPMQVEASLWNGDDWATDGG-------------------RTKVNWSYSPFIAHFRDF 223

  Fly   433 LTFGLSVGGFNEYQHEIKPWNERAPQAQKAFWK---------EVKKIRDHWLDEGHMKIDY 484
            ...|.::.|.:.        |..|.::...:|.         ..:|:.:| :...:|..||
plant   224 ALSGCNIDGRSN--------NVGACESSNYWWNAGNYQRLSGNEQKLYEH-VRSKYMNYDY 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 45/256 (18%)
XTH3NP_189141.1 GH16_XET 33..289 CDD:185685 45/256 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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