DRSC/TRiP Functional Genomics Resources

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Protein Alignment LAG3 and rig-6

DIOPT Version :9

Sequence 1:NP_002277.4 Gene:LAG3 / 3902 HGNCID:6476 Length:525 Species:Homo sapiens
Sequence 2:NP_001022014.1 Gene:rig-6 / 173828 WormBaseID:WBGene00016354 Length:1196 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LAG3NP_002277.4 Interaction with FGL1. /evidence=ECO:0000269|PubMed:30580966, ECO:0000269|PubMed:9159144 37..252
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..97
Ig_2 174..259 CDD:290606
IG_like 185..259 CDD:214653
Ig 263..336 CDD:299845
IG_like 267..348 CDD:214653
Connecting peptide. /evidence=ECO:0000250|UniProtKB:Q61790 429..450
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 487..525
KIEELE motif. /evidence=ECO:0000250|UniProtKB:Q61790 498..503
12 X 2 AA tandem repeats of E-X 501..524
rig-6NP_001022014.1 Ig 153..237 CDD:299845
Ig 240..335 CDD:299845
Ig 358..427 CDD:299845
IG_like 363..436 CDD:214653
I-set 441..534 CDD:254352
IGc2 456..524 CDD:197706
I-set 547..627 CDD:254352
Ig 552..627 CDD:299845
FN3 737..839 CDD:238020
fn3 970..1047 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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