DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb2 and Cpeb2

DIOPT Version :9

Sequence 1:NP_001356977.1 Gene:orb2 / 39018 FlyBaseID:FBgn0264307 Length:769 Species:Drosophila melanogaster
Sequence 2:XP_038948724.1 Gene:Cpeb2 / 360949 RGDID:1307485 Length:1039 Species:Rattus norvegicus


Alignment Length:803 Identity:359/803 - (44%)
Similarity:408/803 - (50%) Gaps:167/803 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PKANSATSSASGSNSNLSGSTSA---SASAATSPTSS--------------GTAVGGILSGAPKS 54
            |..|.|..|....|..|..|.|.   .|:..||..||              |...||...|...|
  Rat   297 PPVNPAPGSMESPNHPLLNSPSTLLPGAALGTSAFSSLQSPDLPHPGGGGGGGPPGGGGGGGSAS 361

  Fly    55 PPGL-GSSTPISVRF---------NANEESLDDILQSFHH---------SKHSPSGGASGGGDAS 100
            ||.| |..||.||:.         .|.::......|....         |..:|.||...||..|
  Rat   362 PPPLPGFGTPWSVQTASPPPPQPPPAPQQQPSQQQQPPQQPPQPQPPGSSAATPGGGGGAGGSLS 426

  Fly   101 ---PTSNLLGMKNNGLGLVVGNCDSL------SSSPSQPQMHAGSASLFGNDEVSLRNNFMQAGG 156
               |.|     .::..|...|...|:      |.||..|...||.:...|...        ..||
  Rat   427 AMPPPS-----PDSENGFYPGLPSSMNPAFFPSFSPVSPHGCAGLSVPAGGGG--------GGGG 478

  Fly   157 FFNRKSCGGLP-----NLNLNKPPQLHQQQHQQQH-----QQHQQHQ-------QQQQLHQHQQQ 204
            |....|...:|     ||...:||....||.|.:.     |..||||       ||:..:.|.|.
  Rat   479 FGGPFSAPAVPAPPAMNLPQQQPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQP 543

  Fly   205 L---SPNLSALHHHHQQQQQLRES---GGSHSPSSPGGGGGGSPYNGSQAGCSSGGISPI-PPQM 262
            |   ||     ..:||.......|   |..|.......|..|.|...:|       |||: .|..
  Rat   544 LLKQSP-----WSNHQSSGWGTASMSWGAMHGRDHRRSGNMGIPGTMNQ-------ISPLKKPFS 596

  Fly   263 G---VSPKYRRSIS------------FPIKGNSPTAIYGNMHMDGMGSGHMNIPTLSIGNGGGGG 312
            |   ..||:.||..            |....||.|.:...:.   |....:.:|        ..|
  Rat   597 GNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVR---MVRSSLQLP--------AWG 650

  Fly   313 STGMVSAGATGGGDAPYLGNSYGNMMTSNGQMHHGGGLDNSLCDYMR--NMSLGG---------- 365
            |..:..:..|..|.:..  :...:.|..:..||   .|:|||.|.||  :..|.|          
  Rat   651 SDSLQDSWCTAAGTSRI--DQDRSRMYDSLNMH---SLENSLIDIMRAEHDPLKGRLSYPHPGTD 710

  Fly   366 -----NGGGDGSNSMSL-----MQDRMRVMGGPKHLSEADAMAIAASGNDPSVYLNALKMGSPSR 420
                 ||...|:...|.     ...|.|   |...|...|...:....:|....||     ||:.
  Rat   711 NLLMLNGWVPGAELKSCGLHARSYGRRR---GRSSLFPIDDSLLDDGHSDQVGVLN-----SPTC 767

  Fly   421 LSPHSPHSPIQGGNGGNVGDGTARFSRKVFVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKS 485
            .|.|.        ||..:    .|||||||||||||||||||||.||||||||||||||||||||
  Rat   768 YSAHQ--------NGERI----ERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKS 820

  Fly   486 YFPPKGYAFLLFQDESSVQQLIDSCITDEDKLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMS 550
            |||||||||||||:|||||.|||:||.::.||||||||||||||.||||||.|:|:|:|:|.:..
  Rat   821 YFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQP 885

  Fly   551 LDPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 615
            ||||||:|||||||||:|.||||||||||||||||||||||||||||||||||||||||||||||
  Rat   886 LDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 950

  Fly   616 ARFVQLQHGDIDKRVEVKPYVLDDQMCDECEGQRCGGKFAPFFCANVTCLQYYCEHCWAVIHSRP 680
            ||||||||||||||||||||||||||||||:|.||||||||||||||||||||||.|||.||||.
  Rat   951 ARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRA 1015

  Fly   681 GREYHKPLVKEGADRPRAVPFRW 703
            |||:|||||||||||||.:.|||
  Rat  1016 GREFHKPLVKEGADRPRQIHFRW 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orb2NP_001356977.1 RRM1_CPEB2_like 447..538 CDD:241168 81/90 (90%)
RRM2_CPEB2_like 555..635 CDD:241170 76/79 (96%)
CEBP_ZZ 630..691 CDD:318563 54/60 (90%)
Cpeb2XP_038948724.1 RRM1_CPEB2_like 782..873 CDD:410123 81/90 (90%)
RRM2_CPEB2_like 890..970 CDD:410125 76/79 (96%)
CEBP_ZZ 965..1026 CDD:406704 54/60 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 173 1.000 Domainoid score I3591
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 549 1.000 Inparanoid score I1101
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001410
OrthoInspector 1 1.000 - - otm45919
orthoMCL 1 0.900 - - OOG6_103884
Panther 1 1.100 - - LDO PTHR12566
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X879
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.960

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