DRSC/TRiP Functional Genomics Resources

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Protein Alignment orb2 and CPEB3

DIOPT Version :9

Sequence 1:NP_001356977.1 Gene:orb2 / 39018 FlyBaseID:FBgn0264307 Length:769 Species:Drosophila melanogaster
Sequence 2:XP_006717777.1 Gene:CPEB3 / 22849 HGNCID:21746 Length:715 Species:Homo sapiens


Alignment Length:783 Identity:338/783 - (43%)
Similarity:398/783 - (50%) Gaps:180/783 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PKANSATSSASGSNSNLSGST----SASASAATSPTSSGTAVGGILSGAPKSP--PGLGSSTPIS 65
            |:..|:.|.|  .::.||..|    ..||..|.||.::..|..|......:||  |||       
Human    26 PQPESSVSEA--PSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLPGL------- 81

  Fly    66 VRFNANEESLDDILQSFHHSKHS---PSGGASGGGDASPTSNLLGMKNNGLGLVVGNCDSLSSSP 127
                           |||.....   |...|:.|...||:.        |.....|..:::..|.
Human    82 ---------------SFHQPPQQPPPPQEPAAPGASLSPSF--------GSTWSTGTTNAVEDSF 123

  Fly   128 SQPQMHAGSASLFGNDEVSLRNNFMQAGGFFNRKSCGGLPNLNLNKPPQ--LHQQQHQQQ----- 185
            .|.........||.|....:...|   ||.|:               ||  |.|.||.||     
Human   124 FQGITPVNGTMLFQNFPHHVNPVF---GGTFS---------------PQIGLAQTQHHQQPPPPA 170

  Fly   186 -HQQHQQHQQQQQLHQHQQQLSP----------NLSALHHHHQQQQQLRESGGS----------- 228
             ..|..|..|..|....||:.||          ..:|..:.||.....:.|..|           
Human   171 PAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAA 235

  Fly   229 -----------------HSPSSPGGG--GGGSPYN--GSQAGCSSGGISPIPPQMGVSPKYRRSI 272
                             .:||:|.||  .|..|..  |...|...|..||:.|...:...:..::
Human   236 SSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNV 300

  Fly   273 SFPIKGNSPTAIYGNMHMDGMGSGHMNIPTLSIGNGGGGGSTGMVSAGATGGGD---------AP 328
            ..|.|......:.....|:.                         :|..|..|:         .|
Human   301 IAPPKFPRAAPLTSKSWMED-------------------------NAFRTDNGNNLLPFQDRSRP 340

  Fly   329 Y-------LGNSYGNMMTSN-----GQMHHGGGLDNSLCDYM-RNM---SLGGNGGGDGSNSMSL 377
            |       |.||..:|:.::     |:.:...|...|..|.| ||.   .:|.|....|::::..
Human   341 YDTFNLHSLENSLMDMIRTDHEPLKGKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMA 405

  Fly   378 MQDRM--RVMGGPKHLSEADAMAIAASGNDPSVYLNALKMGSPSRLSPHSPHSPIQGGNGGNVGD 440
            :..|.  |..|........||....:.|:      .||..|    ||     ||.:..||..|  
Human   406 LNTRSYGRRRGRSSLFPFEDAFLDDSHGD------QALSSG----LS-----SPTRCQNGERV-- 453

  Fly   441 GTARFSRKVFVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQ 505
              .|:|||||||||||||||||||.|||||||||||||||||||||||||||||||||:|||||.
Human   454 --ERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQA 516

  Fly   506 LIDSCITDEDKLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMSLDPRKTVFVGGVPRPLKAFE 570
            |||:|:.::.||||||||||||||.||||||.|:|:|:|:|.:..||||||:|||||||||:|.|
Human   517 LIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVE 581

  Fly   571 LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPY 635
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Human   582 LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPY 646

  Fly   636 VLDDQMCDECEGQRCGGKFAPFFCANVTCLQYYCEHCWAVIHSRPGREYHKPLVKEGADRPRAVP 700
            ||||||||||:|.||||||||||||||||||||||:|||.||||.|||:||||||||.||||.||
Human   647 VLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVP 711

  Fly   701 FRW 703
            |||
Human   712 FRW 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orb2NP_001356977.1 RRM1_CPEB2_like 447..538 CDD:241168 80/90 (89%)
RRM2_CPEB2_like 555..635 CDD:241170 75/79 (95%)
CEBP_ZZ 630..691 CDD:318563 54/60 (90%)
CPEB3XP_006717777.1 RRM1_CPEB2_like 458..549 CDD:241168 80/90 (89%)
RRM2_CPEB2_like 566..646 CDD:241170 75/79 (95%)
CEBP_ZZ 641..702 CDD:318563 54/60 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165140713
Domainoid 1 1.000 173 1.000 Domainoid score I3695
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 506 1.000 Inparanoid score I1345
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001410
OrthoInspector 1 1.000 - - otm41783
orthoMCL 1 0.900 - - OOG6_103884
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4704
SonicParanoid 1 1.000 - - X879
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.780

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