Protein Alignment orb2 and cpb-1

DIOPT Version :10

• Sequence 1: NP_001356977.1
• Gene: orb2 / 39018
• FlyBaseID: FBgn0264307
• Length: 769
• Species: Drosophila melanogaster
• Sequence 2: NP_499051.3
• Gene: cpb-1 / 176310
• WormBaseID: WBGene00000770
• Length: 560
• Species: Caenorhabditis elegans
• Alignment Length: 571
• Identity: 191/571 - (33%)
• Similarity: 267/571 - (46%)
• Gaps: 135/571 - (23%)

  Fly   202 QQQLSPN----LSA---LHHHHQQQQQLRESGGSHSPSSPGGGGGGSPYNGSQAGCSSGGISPIP 259
            |.||||:    .||   ..|.|::..:.::|||.           |:||           :|...
 Worm     2 QYQLSPSGDFKTSAPVRSSHGHRRSTESKKSGGH-----------GNPY-----------LSTDK 44

  Fly   260 PQMGVSPKYRRSISFPIKGNSPTAIYGNMHMDGMGSGHMNIPTLSIGNGGGGGSTGMVSAGATGG 324
            ..:.:|..:..|             .....|.||.:.|           |....|.|::|.....
 Worm    45 TNLDISVSFLTS-------------QAQKKMRGMSANH-----------GIFDPTEMLTADDPSN 85

  Fly   325 GDAPYLGNS--YGNM-------------MTSNGQMHHGGGLDNSLCDYMRNMSLGGNGGGDGSNS 374
            ....:|.::  |.||             |:.|.........|.|....|...:...|...:.|.|
 Worm    86 YGYQFLNHATFYNNMDIMQAASGDVPPLMSVNPYKQSFDINDASAAMNMAQFAHTLNAIQNSSYS 150

  Fly   375 MS-----LMQ--------------------------DRM---RVMGGPKHLSEADAMAIAASGND 405
            ||     .||                          :||   :.:.|.:::...|..|::|
 Worm   151 MSHYNQAPMQHFISPNSFHVSYNQRFPHIKKNATHANRMVEIKKINGHRYMEVTDPQAVSA---- 211

  Fly   406 PSVY--LNALKMGSPSRLSPHSPHSPIQGGNGGNVGDGTARFSRKVFVGGLPPDIDEDEITTSFR 468
            |..|  |:...||........|...||         .....:|||||:||||.|:.|:::..:|.
 Worm   212 PPEYKRLDGSLMGVSKSCLEASKKRPI---------SAEPLYSRKVFIGGLPIDVSEEQVWATFG 267

  Fly   469 RFGPLVVDWP----HKAESKSYFPPK--------GYAFLLFQDESSVQQLIDSCITDEDKLYLCV 521
            .||.:::|||    |.||.......|        ||.||:|..|.|||:|:::|...|||.||.:
 Worm   268 AFGKVLIDWPRRPEHNAERAEQELKKGSGSRAVTGYVFLVFTHERSVQELVNACEFYEDKYYLQL 332

  Fly   522 SSPTIKDKAVQIRPWRLADADYVLDATMSLDPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAG 586
            ||||:.|||||:|||||:|.||..:...|:|.|:|||:||||||.:|.:||..::..||.|.|.|
 Worm   333 SSPTMTDKAVQVRPWRLSDIDYFCNDNSSVDHRRTVFIGGVPRPTRAQDLARCLEGHYGKVSYVG 397

  Fly   587 IDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECEGQRCG 651
            ||.||||||||||.||.||..|:::.|||.||||:.|.:.:||||:||||:::|.||||||:.|.
 Worm   398 IDIDPELKYPKGAARVTFSTSQAFVRAISGRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCK 462

  Fly   652 GKFAPFFCANVTCLQYYCEHCWAVIH-----SRPGREYHKPLVKEGADRPR 697
            ..:||:||.:.:|||||||.||..:|     .....:.|.|:|:.| |:.|
 Worm   463 HNYAPYFCGHASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTG-DQTR 512

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
orb2	NP_001356977.1	RRM1_CPEB2_like	447..538	CDD:410123	48/102 (47%)
		RRM2_CPEB2_like	555..635	CDD:410125	47/79 (59%)
		CEBP_ZZ	630..691	CDD:465105	31/65 (48%)
cpb-1	NP_499051.3	RRM1_CPEB2_like	246..349	CDD:410123	48/102 (47%)
		RRM2_CPEB2_like	366..446	CDD:410125	47/79 (59%)
		CEBP_ZZ	441..507	CDD:465105	31/65 (48%)