DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb2 and Cpeb1

DIOPT Version :9

Sequence 1:NP_001356977.1 Gene:orb2 / 39018 FlyBaseID:FBgn0264307 Length:769 Species:Drosophila melanogaster
Sequence 2:XP_011249086.1 Gene:Cpeb1 / 12877 MGIID:108442 Length:600 Species:Mus musculus


Alignment Length:577 Identity:171/577 - (29%)
Similarity:238/577 - (41%) Gaps:126/577 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 SHSPSSPGGGGGGSPYNGSQAGCSSGGISPIPPQMGVSPKYRR-------SISFPIKGNSP--TA 283
            |.|| ||.||.|.....|....|......|.......:..:||       |:.|.....:|  ..
Mouse    32 SRSP-SPEGGPGQEEAAGRIKDCWDNQEVPALSTCSNANIFRRINAILDDSLDFSKVCTTPINRG 95

  Fly   284 IYGNMHMDGMGS-----GHMNIPTLSIGNGGG-----GGSTGMVSAGATGGGDAPY--------- 329
            |:..:..|...|     ..|..||.:..:..|     |...|:.|...| |.|.|:         
Mouse    96 IHDQLPADFQDSEETVTSRMLFPTSAQESPRGLPDANGLCLGLQSLSLT-GWDRPWSTQDSDSSA 159

  Fly   330 --------------LGNSYGNMMTSNGQMHH-GGGLDNSLCDYMRNMSLGGNGGGDGSNSMSLMQ 379
                          |||..|....|...:.. |..||......:|...|......|..:|.....
Mouse   160 QSSTQSVLSMLQNPLGNVLGKAPLSFLSLDPLGSDLDKFPAPSVRGSRLDTRPILDSRSSSPSDS 224

  Fly   380 DRMRVMGGPKHLSEADAMA--------IAASGNDPSVYLNALKMGSPSRL------------SPH 424
            |......|..|||:..:..        ::.:||.|.   :.||||..||:            ||.
Mouse   225 DTSGFSSGSDHLSDLISSLRISPPLPFLSMTGNGPR---DPLKMGVGSRMDQEQAALAAVAPSPT 286

  Fly   425 S-------------------PHSPIQ-------GGNGGNVGDGTAR--------------FSRKV 449
            |                   |..|..       ......|.:.|..              :|.||
Mouse   287 SAPKRWPGASVWPSWDLLGAPKDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKV 351

  Fly   450 FVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFP-----PKGYAFLLFQDESSVQQLIDS 509
            |:||:|.||.|..:..:||.||.|.|:||.|.......|     ||||.:|:|:.|.||:.|:.:
Mouse   352 FLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFELEKSVRALLQA 416

  Fly   510 CITDE------DKLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMSLDPRKTVFVGGVPRPLKA 568
            |..|.      .:.|..:||..::.|.||:.||.|||:::|...:..|||.:|||||.:...|.|
Mouse   417 CSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVWSPSQRLDPSRTVFVGALHGMLNA 481

  Fly   569 FELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVK 633
            ..||.|::.|:|||.|||||||.. |||.|:|||.|:||:||:.|::|.||:::.....|:|::.
Mouse   482 EALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVTAAFVEIKTTKFTKKVQID 545

  Fly   634 PYVLDDQMCDECEGQRCGGKFAPFFCANVTCLQYYCEHCWAVIHSRPGREYHKPLVK 690
            || |:|.:|..|..|.     .||||.:..|.:|:|..||...||..|..:|.||::
Mouse   546 PY-LEDSLCLICSSQP-----GPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMR 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orb2NP_001356977.1 RRM1_CPEB2_like 447..538 CDD:241168 39/101 (39%)
RRM2_CPEB2_like 555..635 CDD:241170 39/79 (49%)
CEBP_ZZ 630..691 CDD:318563 23/61 (38%)
Cpeb1XP_011249086.1 CEBP1_N 48..345 CDD:374506 55/300 (18%)
RRM1_CPEB1 347..454 CDD:241167 42/106 (40%)
RRM2_CPEB1 465..550 CDD:241169 44/86 (51%)
CEBP_ZZ 542..597 CDD:374504 23/61 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0129
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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