DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp66E and lbm

DIOPT Version :9

Sequence 1:NP_523985.1 Gene:Tsp66E / 39017 FlyBaseID:FBgn0035936 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster


Alignment Length:255 Identity:51/255 - (20%)
Similarity:82/255 - (32%) Gaps:82/255 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CGVWCAKYLLCIFNFIFFVLGTIIFGVGLWLAVDKHSLIALLKLVESERIEQFTQPQAIEQLAYV 69
            |.....|....:.|   .|||.:..|...|:|.:..                 |:.:.....||:
  Fly     3 CATTSVKIASIVLN---AVLGFLAAGAIGWIAYNAD-----------------TETEEFVIAAYI 47

  Fly    70 LLVIGAVMFFMSFLGYLGAMRESRCLLSTYGTFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQT 134
            ..   :::...:.||...|:|||..|.:|...||::|.|.:||:..|              ||. 
  Fly    48 AC---SLILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCL--------------FLH- 94

  Fly   135 TITSYSLGENVDATSLMW-----NQLMGNFGCCGINDYHDFDASPAWVNGKGNRTIPDACCILKD 194
               .:.:....|...:.|     :.|.....|||.:...|:...        :..||.:|.    
  Fly    95 ---EFDVKSGRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHL--------SLLIPPSCY---- 144

  Fly   195 VAKLVPRDEDCTTNPSDSNSFYKKGCYE-------------VFTEWLIRQRELVIVAIAV 241
                    .|....|   :..|..||.|             :...|::...||:..|:||
  Fly   145 --------ADLQQTP---DHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAV 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp66ENP_523985.1 Tetraspannin 9..258 CDD:278750 50/251 (20%)
uroplakin_I_like_LEL 116..231 CDD:239409 20/132 (15%)
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 50/250 (20%)
tetraspanin_LEL <109..169 CDD:239401 15/82 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442972
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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