DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpA1 and trpa1a

DIOPT Version :10

Sequence 1:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster
Sequence 2:NP_001007066.1 Gene:trpa1a / 474351 ZFINID:ZDB-GENE-050105-6 Length:1115 Species:Danio rerio


Alignment Length:1145 Identity:417/1145 - (36%)
Similarity:645/1145 - (56%) Gaps:107/1145 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 NSR-IALKDAKGRTAAHQAAARNRVNILRYIRDQNG--DFNAKDNAGNTPLHIAVESDAYDALDY 176
            ||| :..:|..|.:..|.|:|.....|:|:|....|  :.|.:|..||||||.||:.|...:...
Zfish    50 NSRYLDTRDNIGASPLHYASANGHFRIIRHIVQIVGHQELNVRDEEGNTPLHWAVQKDQPGSCSV 114

  Fly   177 LLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQYRNVIDIQQGGEHGRTALHLAAIYDHEEC 241
            |||:..|..|||...|||:|:|..|.|...|..:..::.. |:...|:.|.|.:.|:|..|:.|.
Zfish   115 LLSLGADPNVLNNSHQAPIHMAVSLGKNFVLEQLVSHKQT-DVNLEGDLGNTPVILSAALDNHEA 178

  Fly   242 ARILITEFDACPRKPC---NNGYYPIHEAAKNASSKTMEVFFQWGEQRGCTREEMISFYDSEGNV 303
            ..||...    ..|.|   |.|::|||.||.:.:.|:|||....||:.|.:.:..|::.|...:.
Zfish   179 LGILYKH----GAKFCRQNNLGHFPIHAAAFSGAKKSMEVILLKGEEAGLSIDAHINYVDKSCSS 239

  Fly   304 PLHSAVHGGDIKAVELCLKSGAKISTQQHDLSTPVHLACAQGAIDIVKLMFEMQPMEKRLC--LS 366
            |||.||.||::..::||:..||||..||.|.||.:|.||:|||.::||:|....|   ::|  ::
Zfish   240 PLHLAVRGGNLDIIKLCIGYGAKIDQQQCDKSTALHFACSQGATEVVKVMLSSYP---KVCDLIN 301

  Fly   367 CTDVQKMTPLHCASMFDHPDIVSYLVAEGADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACI 431
            .||....||||.|.:|||.::..||:::||:|:.:|.:..||||||.|...|:||:||:..||.:
Zfish   302 ITDGANQTPLHKAVIFDHFELSEYLMSQGANIDFVDCKGHSPLLLATSCGAWRTVNLLLSHGADL 366

  Fly   432 SVKDAAARNVLHFVIMNGGRLTDFAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLE 496
            :.||.:..|.||..|:....|.:...:|...::   ::.|||::|..||:|||||.|.|...|::
Zfish   367 TKKDKSGCNFLHLAILQPRGLKNLPTEVLQHES---VRELLNDEDIEGCTPLHYACRLGIPDSVK 428

  Fly   497 NLIRLGACINLKNNNNESPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQGHT 561
            |::.|...::.|:...:|.|||||.:||.||..:||:....:.::||.|..|:||||::|::||.
Zfish   429 NMLGLEVSLDQKSKEKKSALHFAAEFGRINTCHRLLEMVTDTRLLNEGDEKGLTPLHLASREGHV 493

  Fly   562 RVVQLLLNRGALLHRDHTGRNPLQLAAMSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENK 626
            :||:|||.:|||.|.|:.|.:.|..||..|||:|::.|.:.:..||::.|.|||||||||.....
Zfish   494 KVVELLLRKGALFHSDYRGWSGLHHAASEGYTQTMDTLLTSNIKLLNKTDGDGNTALHLAARAGH 558

  Fly   627 PHAISVLMSMGCKLVYNVLDMSAIDYAIYYKYPEAALAMVTHEERANEVMAL---RSDKHPCVTL 688
            ..|:.:|:..|.|::.|..|.|.:..|::....|.. .||...:|..|.|..   .|.|. |:.:
Zfish   559 VAAVRLLLYRGAKIILNKNDASFLHEAVHNARREVT-NMVIESDRCEEAMTTYKPNSTKR-CIVM 621

  Fly   689 ALIASMPKVFEAVQDKCITKANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLP 753
            .:|..:|:.|:.:.|.||.::....:..::||:|:|.:||.|....|   |||.....|.. ||.
Zfish   622 DMIEFLPESFKHLLDTCIRESEEDVNCTNYYIEYNFRWLQHPLQNLK---KTGMEKDMAYK-PLS 682

  Fly   754 ALNTMVTHGRVELLAHPLSQKYLQMKWNSYGKYFHLANLLIYSIFLVFVTIYSSLMMNNIELKAG 818
            |||.||...||.||.||:.:|||:|||::||...||.|:.:|::. ||...|  |::|   ||. 
Zfish   683 ALNAMVNFNRVNLLTHPVCKKYLEMKWSAYGIKAHLLNMTVYALG-VFPLTY--LIVN---LKP- 740

  Fly   819 DNKTMSQYCNMGWEQLTMNLSQNPSVASQIRLDSCEERINRTTAILFCAVVIVVYILLNSMRELI 883
                            |:..|:|.:..:.: ..|..::...||:.:...:.:.:|.:   .:|::
Zfish   741 ----------------TLVTSRNVTSVNMV-CTSLYKQSYLTTSSMLLVLAMNMYAV---GKEIL 785

  Fly   884 QIYQQKLHYILETVNLISWVLYISALVMVTPAFQPDGGIN---TIHYSAASIAVFLSWFRLLLFL 945
            |::||:|:|:.:..|.:.|...|.||:.|.|..     :|   :.|:.|.::|...||..|||:|
Zfish   786 QMFQQRLNYLRDLSNYMDWAAAICALLFVVPLL-----MNLKSSWHWQAGALAALTSWLNLLLYL 845

  Fly   946 QRFDQVGIYVVMFLEILQTLIKVLMVFSILIIAFGLAFYILLSKIIDPQPNHLSFSNIPMSLLRT 1010
            |||:::|||||||.||.:||:.::::|..||:.|.|:||.|:   |:.|    .|..:.:|||:|
Zfish   846 QRFERIGIYVVMFREISRTLLSIIVLFFYLILGFALSFYALM---IEQQ----HFGRMFLSLLQT 903

  Fly  1011 FSMMLGELDFVGTYVNTYYRDQLKVPMTSFLILSVFMILMPILLMNLLIGLAVGDIESVRRNAQL 1075
            |.||:||:::...::..|.:..|..|..:..|...|::|:||||||||||||||||..|:.||.|
Zfish   904 FVMMVGEMNYQDNFMKPYLQGDLPFPDLTLAIFVWFVLLVPILLMNLLIGLAVGDIAEVQTNACL 968

  Fly  1076 KRLAMQVVLHTELERKLPHVWLQRVDKMELIEYPNETKCKLGFCDFILRKWFSNPFTEDSSMDVI 1140
            ||:|||:.|||.||.:||:.:::|||::.:.||||  :|..|     .::||             
Zfish   969 KRIAMQIELHTNLEERLPYWFMKRVDQVTIREYPN--RCFSG-----KKRWF------------- 1013

  Fly  1141 SFDNND--------------DYINAELERQRRKLRDISRMLEQQHHLVRLIVQKMEIKTEADDVD 1191
             |..|:              ..:..||.:|:.:|::||..:|:||:|::||||||||.:|||:.|
Zfish  1014 -FGGNEVKSRTRLGPTFHQLTPLERELTKQKYRLKEISETMEKQHNLLKLIVQKMEISSEADEHD 1077

  Fly  1192 EGISPNELRSVVGLRSAGGNRWNSPRVRNKLRAALSFNKS 1231
            ......||:..:..:|..|....:...|.|  ...||.|:
Zfish  1078 GPPVFQELKEKLLTKSKWGPLLRAVTARKK--GICSFGKT 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpA1NP_001261600.1 Ank_2 95..183 CDD:463710 26/70 (37%)
ANK repeat 125..155 CDD:293786 9/31 (29%)
ANKYR 140..461 CDD:440430 125/327 (38%)
ANK repeat 157..199 CDD:293786 20/41 (49%)
ANK repeat 259..298 CDD:293786 14/38 (37%)
ANK repeat 300..330 CDD:293786 13/29 (45%)
ANK repeat 336..369 CDD:293786 12/34 (35%)
ANKYR 368..634 CDD:440430 110/265 (42%)
ANK repeat 374..402 CDD:293786 13/27 (48%)
ANK repeat 404..476 CDD:293786 25/71 (35%)
ANK repeat 478..509 CDD:293786 12/30 (40%)
TRPV 481..1093 CDD:454755 232/617 (38%)
ANK repeat 511..545 CDD:293786 14/33 (42%)
ANK repeat 547..576 CDD:293786 16/28 (57%)
ANK repeat 579..611 CDD:293786 11/31 (35%)
ANK repeat 613..638 CDD:293786 11/24 (46%)
trpa1aNP_001007066.1 Ank_2 <55..126 CDD:463710 25/70 (36%)
ANK repeat 61..93 CDD:293786 9/31 (29%)
ANK repeat 95..126 CDD:293786 14/30 (47%)
ANK repeat 128..160 CDD:293786 9/32 (28%)
ANKYR 143..431 CDD:440430 111/298 (37%)
ANK repeat 162..193 CDD:293786 10/34 (29%)
ANK repeat 195..234 CDD:293786 14/38 (37%)
ANK repeat 236..264 CDD:293786 12/27 (44%)
ANK repeat 269..304 CDD:293786 14/37 (38%)
ANK repeat 306..337 CDD:293786 13/30 (43%)
ANK repeat 339..370 CDD:293786 14/30 (47%)
ANKYR 358..599 CDD:440430 94/244 (39%)
ANK repeat 410..441 CDD:293786 12/30 (40%)
ANK repeat 443..477 CDD:293786 14/33 (42%)
ANK repeat 480..509 CDD:293786 17/28 (61%)
ANK repeat 511..543 CDD:293786 11/31 (35%)
ANK repeat 545..570 CDD:293786 11/24 (46%)
Ion_trans <784..963 CDD:459842 78/190 (41%)

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