DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpA1 and CG42672

DIOPT Version :9

Sequence 1:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster
Sequence 2:NP_726059.5 Gene:CG42672 / 37433 FlyBaseID:FBgn0261554 Length:1642 Species:Drosophila melanogaster


Alignment Length:1086 Identity:210/1086 - (19%)
Similarity:360/1086 - (33%) Gaps:366/1086 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 FYDSEGNVPLHSA----VHGGDIKAVELCLKS-GAKISTQQHDLSTPVHLACAQGAIDIVKLMFE 355
            |.||.|::. |.|    :...||..:...|.| ...|..:..:.:|.:.:...:|....|:    
  Fly   161 FGDSMGSLG-HRALLQYIDNNDISGLRAILDSRHLTIDDRDENATTVLMVVAGRGLTAFVR---- 220

  Fly   356 MQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVAEGADINALDKEHRSPLLLAASRSGWKT 420
             :.:.:...:...|:...|.|.|||...|.|:|..|:..||::...|....:.|:.||.|...:.
  Fly   221 -EFLARGADVQAEDLDNWTALLCASRNGHLDVVQLLLDHGAEVEHRDMGGWTSLMWAAYRGHTEL 284

  Fly   421 VHLLI------------RLGACISVKDAAARNVLHFVIMNGGRLTDFAEQVANCQTQAQLKLLLN 473
            |.||:            .|||.:.......::::..::..|.:                    :|
  Fly   285 VRLLLDKGADGNAHGNYHLGALLWAAGRGYKDIVELLVQRGAK--------------------VN 329

  Fly   474 EKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNNESPLHFAARYGRYNTVRQLLDSEKGS 538
            ..|..|.:.|.:|.|.|::..::.|::.||.::.....:.:||..||..|..:.|..:|:.:.. 
  Fly   330 VGDKYGTTALVWACRRGNVEIVDTLLKAGANVDTAGMYSWTPLLVAAAGGHTDCVSSILEKKPN- 393

  Fly   539 FIINESDGAGMTPLHISSQQGHTRVVQLLLNRGALLH-RDHTGRNPLQLAAMSGYTETIELLHSV 602
              :|..|..|||.|.|:|::|...:...|:..||.:: :|.....||..|..:|:...:|.|...
  Fly   394 --VNALDKDGMTALCIASREGFQDIAASLIAAGAYINIQDRGADTPLIHAVKAGHRTVVEALLKK 456

  Fly   603 HSHLLDQVDKDGNTALHLATMENKPHAISVLM----------------------SMGCKLVYNVL 645
            |:. :|...||..||::.|..:.....:.:|:                      :...::|:.:|
  Fly   457 HAD-VDIQGKDRKTAIYTAVEKGHTPIVKLLLATNPDLESATKDGDTPLLRAVRNRNLEIVHLLL 520

  Fly   646 DMSAI--------DYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLAL--IASMPKVFEA 700
            |..|.        |..::       :||....:...|.: ||:.||..:....  ....|...::
  Fly   521 DRKAKVTASDKRGDTCLH-------IAMRARSKTIVEAL-LRNPKHSQLLYRANKAGETPYNIDS 577

  Fly   701 VQDKCI-------TKANCKKDSKSF--YIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALN 756
            :..|.|       .:.|..:||:..  |..||.|.                    |..:..|.|.
  Fly   578 LHQKTILGQVFGARRLNTNEDSEGMLGYELYSSAL--------------------ADVLSEPTLT 622

  Fly   757 TMVTHGRVELLAHPLSQKYLQMKWNSYGKYFHLANL---------------LIYSIFLVFVTIYS 806
            |.:|.|             |..||.| ||.|.|..|               :..|..|..|.::.
  Fly   623 TPITVG-------------LYAKWGS-GKSFLLNKLRDEMNNFARQWAEPPIRTSGLLFIVCLHV 673

  Fly   807 SLMMNNI------ELKAGDNKTMS------------QYCN----MGWEQLTMNLSQNPSVASQIR 849
            :|::..|      ....|.:..:.            :|||    |.|.....:            
  Fly   674 ALLIGTIVGLSTWSAVVGVSAAVGFLLLAYLLLAAVRYCNYQMDMQWAYSVQH------------ 726

  Fly   850 LDSCEERINRTTAIL---FC------------------------------AVVIVVYILLNSMRE 881
              ..|:|:.|...||   ||                              ||..::..||:::..
  Fly   727 --GLEKRMTRLRLILQVAFCHPPGPQSDSQAKPVRFHFAEANSASPTGDGAVAHMLAALLDAIES 789

  Fly   882 LIQIYQQKLHYILETVNLISWV---LYISALVMVTPAFQPDGGINTIHYSAASIAVFLSWFRLLL 943
                     ||        .|:   ||        .||:|         ....:.|...|.|:..
  Fly   790 ---------HY--------GWLATRLY--------RAFRP---------KCLKVDVGWRWRRMCC 820

  Fly   944 FLQRFDQVGIYVVMFLEILQTLIKVLMVFSILIIAFGLAFYILLSKIIDPQPNHLSFSNIPMSLL 1008
                     |.:|:..|:  .|:.|:...|:.:..|..|        .:.:..|     |.::|.
  Fly   821 ---------IPIVLIFEL--ALVTVVTGISLTVAYFTFA--------DEKEKEH-----ILVALY 861

  Fly  1009 RTFSMMLGELDFVGTYVNTYYRDQLKVPMTSFLILSVFMILMPILLMNLLIGLAVGDIESVRRNA 1073
            ...::|       ||.:.|:.....||      .:|:|...:.:|..      ||...||    |
  Fly   862 VIAAVM-------GTLICTHLHVLAKV------FVSLFTSHIRVLKR------AVRSSES----A 903

  Fly  1074 QLKRLAMQVVLHTELERKLPHVWLQRVDKMELIEYPNETKCKLGFCDFILRKWFSNPFTEDSSMD 1138
            .|..|..:|.:.|::                       .||             .:.||...|..
  Fly   904 PLTMLGAEVAVMTDM-----------------------VKC-------------LDAFTNQQSRL 932

  Fly  1139 VISFDNNDDYINAELERQRRKLRDISRMLEQQHH-LVRLIVQKMEIKTEADDVDE-------GIS 1195
            |...|..|   :.:.||....|..:..:|...:. .|.||.....:..:|.:.:.       ||.
  Fly   933 VGVIDALD---SCDTERILTLLNAVQTLLSSPNRPFVLLISVDPHVIAKAAEANSRRLFTEGGIG 994

  Fly  1196 PNE-LRSVV---------GLRSAGGNRWNSPRVRNKLRAALSFNKS 1231
            .:: ||::|         |||          :|:.....||.|.:|
  Fly   995 GHDFLRNLVHLPVYLQNSGLR----------KVQRAQMTALLFKRS 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpA1NP_001261600.1 Ank_2 95..188 CDD:289560
ANK 121..246 CDD:238125
ANK repeat 125..155 CDD:293786
ANK repeat 157..199 CDD:293786
Ank_2 230..330 CDD:289560 11/38 (29%)
ANK repeat 259..298 CDD:293786 1/1 (100%)
ANK 298..425 CDD:238125 32/131 (24%)
ANK repeat 300..330 CDD:293786 8/34 (24%)
Ank_2 305..402 CDD:289560 22/101 (22%)
ANK repeat 336..369 CDD:293786 3/32 (9%)
ANK repeat 374..402 CDD:293786 11/27 (41%)
ANK repeat 404..476 CDD:293786 12/83 (14%)
ANK 473..599 CDD:238125 35/126 (28%)
ANK repeat 478..509 CDD:293786 8/30 (27%)
Ank_2 483..572 CDD:289560 24/88 (27%)
ANK repeat 511..545 CDD:293786 8/33 (24%)
ANK 542..662 CDD:238125 32/150 (21%)
ANK repeat 547..576 CDD:293786 10/29 (34%)
Ank_2 552..643 CDD:289560 23/113 (20%)
ANK repeat 579..611 CDD:293786 8/31 (26%)
ANK repeat 613..638 CDD:293786 5/46 (11%)
Ion_trans 858..1074 CDD:278921 44/251 (18%)
CG42672NP_726059.5 ANK 169..289 CDD:238125 29/125 (23%)
Ank_2 173..266 CDD:289560 20/97 (21%)
ANK repeat 205..233 CDD:293786 3/32 (9%)
ANK 231..355 CDD:238125 31/143 (22%)
ANK repeat 235..266 CDD:293786 11/30 (37%)
Ank_2 240..332 CDD:289560 23/111 (21%)
ANK repeat 268..299 CDD:293786 7/30 (23%)
ANK repeat 301..332 CDD:293786 5/50 (10%)
Ank_2 306..398 CDD:289560 19/114 (17%)
ANK 329..454 CDD:238125 35/127 (28%)
ANK repeat 334..362 CDD:293786 8/27 (30%)
ANK repeat 367..398 CDD:293786 8/33 (24%)
ANK repeat 400..431 CDD:293786 10/30 (33%)
Ank_4 401..454 CDD:290365 16/52 (31%)
ANK 428..553 CDD:238125 23/133 (17%)
ANK repeat 435..464 CDD:293786 8/29 (28%)
Ank_2 438..530 CDD:289560 17/92 (18%)
ANK repeat 466..497 CDD:293786 5/30 (17%)
ANK repeat 499..530 CDD:293786 4/30 (13%)
Ank_5 518..575 CDD:290568 12/64 (19%)
KAP_NTPase 605..1136 CDD:284995 110/604 (18%)
SAM_superfamily 1357..1392 CDD:188886
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24123
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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