DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpA1 and SPBP16F5.05c

DIOPT Version :9

Sequence 1:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster
Sequence 2:NP_595779.1 Gene:SPBP16F5.05c / 2541266 PomBaseID:SPBP16F5.05c Length:146 Species:Schizosaccharomyces pombe


Alignment Length:128 Identity:32/128 - (25%)
Similarity:60/128 - (46%) Gaps:13/128 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 MGCSPLHYASRDGHIRSLENLIRLGAC---INLKNNNNESPLHFAARYGRYNTVRQL---LDSEK 536
            |....|.||.|......|:.:|.  .|   ::.::.|..|.||.|:..|....|:::   |:.| 
pombe     1 MDVDDLIYACRAADEELLDEIIE--KCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKE- 62

  Fly   537 GSFIINESDGAGMTPLHISSQQGHTRVVQLLLNRGALLH-RDHTGRNPLQLAAMSGYTETIEL 598
               :||..:.:|.|.:|.::..||..:.:|||..|...| ::...::|:..|.:....:.::|
pombe    63 ---VINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDL 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpA1NP_001261600.1 Ank_2 95..188 CDD:289560
ANK 121..246 CDD:238125
ANK repeat 125..155 CDD:293786
ANK repeat 157..199 CDD:293786
Ank_2 230..330 CDD:289560
ANK repeat 259..298 CDD:293786
ANK 298..425 CDD:238125
ANK repeat 300..330 CDD:293786
Ank_2 305..402 CDD:289560
ANK repeat 336..369 CDD:293786
ANK repeat 374..402 CDD:293786
ANK repeat 404..476 CDD:293786
ANK 473..599 CDD:238125 32/128 (25%)
ANK repeat 478..509 CDD:293786 8/33 (24%)
Ank_2 483..572 CDD:289560 26/94 (28%)
ANK repeat 511..545 CDD:293786 11/36 (31%)
ANK 542..662 CDD:238125 14/58 (24%)
ANK repeat 547..576 CDD:293786 10/29 (34%)
Ank_2 552..643 CDD:289560 11/48 (23%)
ANK repeat 579..611 CDD:293786 3/20 (15%)
ANK repeat 613..638 CDD:293786
Ion_trans 858..1074 CDD:278921
SPBP16F5.05cNP_595779.1 ANK 6..124 CDD:238125 31/123 (25%)
Ank_2 6..101 CDD:289560 28/100 (28%)
ANK repeat 6..33 CDD:293786 7/28 (25%)
ANK repeat 35..68 CDD:293786 11/36 (31%)
ANK repeat 70..101 CDD:293786 10/30 (33%)
Ank_2 76..>136 CDD:289560 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2336
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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