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Protein Alignment TrpA1 and Sowahd

DIOPT Version :9

Sequence 1:	NP_001261600.1	Gene:	TrpA1 / 39015	FlyBaseID:	FBgn0035934	Length:	1232	Species:	Drosophila melanogaster
Sequence 2:	NP_776140.1	Gene:	Sowahd / 245381	MGIID:	3045274	Length:	327	Species:	Mus musculus

Alignment Length:	219	Identity:	56/219 - (25%)
Similarity:	82/219 - (37%)	Gaps:	84/219 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly   401 LDKEHRSPLLLAASRS---GWKTVHLLIRLGACISVKDAAARNVLHFVIMNGGRLTDFAEQVANC 462
            |.:||..|.:..:.||   |...|        |:..::       |..|:          ..|.|
Mouse    88 LSEEHLEPAVPGSRRSSGQGSSRV--------CLEPRE-------HAWIL----------AAAEC 127

  Fly   463 Q-------TQAQLKLLLNEKDSMGCSPLHYASRDG-HIRSLENLIRLGACINLKNNNNESPLH-F 518
            :       .:|:..||:.|....|.|.||:.::.| |    |.||.               || |
Mouse   128 RFEVLLEMLEAEPSLLMREDPITGYSVLHWLAKHGRH----EELIL---------------LHDF 173

  Fly   519 AARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQGHTRVVQLLLNRGAL----LHRDHT 579
            |.|.|.             .|.::.....|:||||:::.|||..|:::|:  |||    ..|||:
Mouse   174 ARRRGL-------------PFDVSAPGSGGLTPLHLAALQGHDMVIKVLV--GALGADPSRRDHS 223

  Fly   580 GRNP---------LQLAAMSGYTE 594
            |..|         |.|..:||..|
Mouse   224 GNRPCHYLRPDASLNLRELSGAEE 247

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.