DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpA1 and si:ch73-193i2.2

DIOPT Version :9

Sequence 1:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster
Sequence 2:XP_021336382.1 Gene:si:ch73-193i2.2 / 101886139 ZFINID:ZDB-GENE-141215-32 Length:513 Species:Danio rerio


Alignment Length:514 Identity:96/514 - (18%)
Similarity:195/514 - (37%) Gaps:139/514 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   718 FYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTHGRVELLAHPLSQKYLQMKWNS 782
            |::|...|..|..::.. ::.:|.:..:.....|...|..:|..|:::|:.||:..|.:.:|||.
Zfish     4 FHVKDRMARQQFYYLHL-MEPQTADKTSPKGSDPSSPLEFIVNLGKLDLIMHPVVLKLITVKWNL 67

  Fly   783 YGKYFHLANLLIYSIFLVFVTIYSSLMMNNIELKAGDNKTMSQYCNMGWEQLTMNLSQNPSVASQ 847
            ||:......||:..:|:|                             .|..:.:::|..|. ..:
Zfish    68 YGRMGAWILLLLNFLFIV-----------------------------SWTTVAISVSVRPD-GDR 102

  Fly   848 IRLDSCEERINRTTAILFCAVVIVVYILLNSMRELIQIYQQKLHYILETV--------------- 897
            ..|.....|:    .::..|:|:.|..:...:.|:::..::..|:...||               
Zfish   103 YDLPGDWWRV----LLVVLALVLTVTEVYREVMEIVRSRRKLKHWQRWTVQKINEDLSCSHPMWP 163

  Fly   898 -------------------------NLISWVLYISALV----------MVTPAFQPDGGINTIHY 927
                                     |:..|::|:..|.          :|:...:    :|::..
Zfish   164 EERNYLEGQIKYIRNMKGTYAQDLWNIFDWLVYLLLLAVLGIHLADIFLVSDLLR----LNSLRL 224

  Fly   928 SAASIAVFLSWFRLLLFLQRFDQVGIYVVMFLEILQTLIKVLMVFSILIIAFGLAFYILLSKIID 992
            .|.|| :|| |.||:..::.|..:|.::||..:|...:::.|.::..:.:.|..||:|:...:.|
Zfish   225 FAVSI-IFL-WLRLMKHVRAFRAMGPFIVMLGKIAGDVLRFLFLYIEIYVPFACAFWIIFGGLED 287

  Fly   993 PQPNHLSFSNIPMSLLRTFSMMLGELDFVGTYVNTY-YRDQLKV-PMTSFLILSVFMILMPILLM 1055
            ..    |...:|..|...:.:         |.|:.| :.:.|:| .:.::|:...|:.|..||.:
Zfish   288 VP----SMETVPRLLYSLYRI---------TLVDDYEFDEMLEVDTVMAYLLCGTFLALSAILCV 339

  Fly  1056 NLLIGLAVGDIESVRRNAQLKRLAMQVVLHTELERKLPHVWLQRVDKMELIEYPNETKCKLGFCD 1120
            ||||.|.....:.|..||....:..|..:..::|..:|                         | 
Zfish   340 NLLIALLSDTFQRVYDNALANAVMQQAAIILQIEESMP-------------------------C- 378

  Fly  1121 FILRKWFSNPFTEDSSMDVISFDNNDDYINAELERQRRKLRD-----ISRMLEQQHHLV 1174
              ||:.:.......:...:..|.::|..||.|...:.:||.:     :.|.|:.|..::
Zfish   379 --LRRCYDKEHIHRNCAPLGEFYDDDVTINPEKHAEMKKLTEQIKDTLDRHLDIQREMI 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpA1NP_001261600.1 Ank_2 95..188 CDD:289560
ANK 121..246 CDD:238125
ANK repeat 125..155 CDD:293786
ANK repeat 157..199 CDD:293786
Ank_2 230..330 CDD:289560
ANK repeat 259..298 CDD:293786
ANK 298..425 CDD:238125
ANK repeat 300..330 CDD:293786
Ank_2 305..402 CDD:289560
ANK repeat 336..369 CDD:293786
ANK repeat 374..402 CDD:293786
ANK repeat 404..476 CDD:293786
ANK 473..599 CDD:238125
ANK repeat 478..509 CDD:293786
Ank_2 483..572 CDD:289560
ANK repeat 511..545 CDD:293786
ANK 542..662 CDD:238125
ANK repeat 547..576 CDD:293786
Ank_2 552..643 CDD:289560
ANK repeat 579..611 CDD:293786
ANK repeat 613..638 CDD:293786
Ion_trans 858..1074 CDD:278921 52/267 (19%)
si:ch73-193i2.2XP_021336382.1 TRP_2 <161..383 CDD:331598 52/268 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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