DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dally and Gpc2

DIOPT Version :9

Sequence 1:NP_001246685.1 Gene:dally / 39013 FlyBaseID:FBgn0263930 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_766000.1 Gene:Gpc2 / 71951 MGIID:1919201 Length:579 Species:Mus musculus


Alignment Length:616 Identity:134/616 - (21%)
Similarity:223/616 - (36%) Gaps:168/616 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 GSTHQCDA--VKSYFESIDIKSSGTYS-----------EKGAICGG--NCCNNATELELRDKAAG 113
            |..|..:|  |:|..|:..:..:..||           |...:|..  .||::.||.:|...|..
Mouse    19 GPGHGSEAKVVRSCAETRQVLGARGYSLNLIPPSLISGEHLQVCPQEYTCCSSETEQKLIRDAEV 83

  Fly   114 MFEQLLHHHTSSLRGVLETNAKQFQSHVLELAQISENMTHSLFSKVYTRMVPSSRMMIHQLYTEI 178
            .|..|:....|.|...|....::|.....|:..||::....|||..|.|:.....::.:.|::.:
Mouse    84 TFRGLVEDSGSFLIHTLAARHRKFNEFFREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGL 148

  Fly   179 MNHLIYTSNYTNSNGQLGRRGIGSVQSNLEEAVRHFFVQL----FPVAYHQMVHLSKNNLGDLHE 239
                   .:|...:|:           .|::.:..|:.||    ||:.:.|.         ....
Mouse   149 -------RDYYEKSGE-----------GLDDTLADFWAQLLERAFPLLHPQY---------SFPP 186

  Fly   240 DYVNCLQHNFD----EMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTD 300
            |::.||.....    .:.||||.|::::..:.:::..:...:..|.....|:|||..:   .:.:
Mouse   187 DFLLCLTRLTSTADGSLQPFGDSPRRLRLQISRALVAARALVQGLETGRNVVSEALKV---PVLE 248

  Fly   301 TCKLHLLKMHYCPNCNGHHSSSRSETKLCYGYCKNVMRGCSAEYAGLLDSPWSGVVDSLNNLVTT 365
            .|:..|:::..||.|.|..|     ...|.|:|.||..||.:...  |:..|.|.:|        
Mouse   249 GCRQALMRLIGCPLCRGVPS-----LMPCRGFCLNVAHGCLSSRG--LEPEWGGYLD-------- 298

  Fly   366 HILSDTGIINVIKHLQTYF-------------SEAIMAAMHNGPELEKKVKKTCGTPSLTPYSSG 417
                  |::.:.:.||..|             ||.:|....|..::..||.:.||||.  |..|.
Mouse   299 ------GLLLLAEKLQGPFSFELAAESIGVKISEGLMHLQENSVKVSAKVFQECGTPH--PVQSR 355

  Fly   418 EPDARPPPHKNNVKW---ATDPDP----GMVL------FLSTIDKSKEFYTTIVDNFCDEQQH-- 467
            ...|..|..:.:..|   |.:..|    |..|      ....:.:.:.|:..:....|.:.:.  
Mouse   356 SRRAPAPREEASRSWRASAEEERPTTAAGTNLHRLVWELRERLSRVRGFWAGLPVTVCGDSRMAA 420

  Fly   468 --SRDDHSCWSGDRFGDYTQLLINPGTDSQRYNPE-------VP-----FNAKAQTGKLNELVDK 518
              |::...||:|...|.|...::....:.|.:|||       ||     .:.:|.|.::.     
Mouse   421 DLSQETAPCWTGVGRGRYMSPVVVGSLNEQLHNPELDTSSPDVPTRRRRLHLRAATARMK----- 480

  Fly   519 LFKIRKSIGAAAPSNSIQATHDIQNDMGEGSGGGEGQIGDD----------------------EE 561
                     |||....:. .||...| ..|||||: |..||                      .:
Mouse   481 ---------AAALGQDLD-MHDADED-ASGSGGGQ-QYADDWKAGAVPVVPPARPPRPPRPPRRD 533

  Fly   562 EYGGAHGSGD-----------GSGDGPHTPI 581
            ..|...|||.           ||..|.|||:
Mouse   534 GLGVRGGSGSARYNQGRSRNLGSSVGLHTPL 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dallyNP_001246685.1 Glypican 51..622 CDD:279494 134/616 (22%)
Gpc2NP_766000.1 Glypican 20..559 CDD:279494 129/608 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 347..382 10/36 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..552 16/71 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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