DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prm and Myo18b

DIOPT Version :9

Sequence 1:NP_523982.2 Gene:Prm / 39002 FlyBaseID:FBgn0003149 Length:879 Species:Drosophila melanogaster
Sequence 2:XP_006249639.1 Gene:Myo18b / 304551 RGDID:1594542 Length:2551 Species:Rattus norvegicus


Alignment Length:915 Identity:199/915 - (21%)
Similarity:359/915 - (39%) Gaps:183/915 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 RLEEAEGGAEHQFEANRKR-----DAELLKL----------RKLLEDVHLESEETTLLLKKKHNE 127
            ||..| |.|||...|..:|     |..|||.          ||.:|:: |:    ||.|:||   
  Rat  1245 RLHRA-GYAEHMGLAQFRRRFQALDPALLKRLDLTSEGLDERKAVEEL-LQ----TLDLEKK--- 1300

  Fly   128 IITDFQEQVEILTKNKARAEKDKAK--------FQTEVYELLSQIESYNKEKI------------ 172
            .:.....||.:.....:|.|:.:.|        ||......||: :.|.|.||            
  Rat  1301 AVAVGHSQVFLKAGVVSRLERQREKLVSRNIVLFQAACRGFLSR-QEYKKLKIRRLAALCIQKNL 1364

  Fly   173 ---------------VSEKHISKLEVSISELNVKIEE---LNRTVIDISSHRSRLSQENIELTKD 219
                           .|.:.:....:|..:|..|.||   |.:.:.:..:.||.|.|....|...
  Rat  1365 TVFLKVKDWPWWGLLASLRPLLSSTLSTEQLRAKEEELTLLRQKLQNSENSRSELRQSADLLESK 1429

  Fly   220 VQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARI 284
            :.||..:|....|........||..|.......|....|::...||:..|..|:.|| ||::.||
  Rat  1430 IADLTSELADERFKGDVACQALESERAERLQALREVQELKAKYQQVQDALGGVQKQL-EEAQQRI 1493

  Fly   285 DLERQLVKANADATSWQNKW------NSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNL 343
            .......|....|..||.:.      |..:..|.::.||.........||||:.:..|.......
  Rat  1494 QTANLEEKPTGGADEWQMRLDCAQLENDFLRKRLQQCEERLDSEMKARTELEQKLGELQSAYEEA 1558

  Fly   344 EKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKH----NVELKSRLDETIILYETSQRDLK 404
            :|...:|..:...|..|||.:...........:.|||.    :::|...|.|:  ::|.|.|:..
  Rat  1559 KKTAHQLRRKCHHLTWDLEDTRVLLENQQSRNHDLEKRQKKFDLQLAQALGES--MFEKSLREKV 1621

  Fly   405 NKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINEL-------NRRLHEL-----EL 457
            ::....||  .||.:::....|..:|..||.:::...:|...||       |:.:..|     ||
  Rat  1622 SRENSGVR--WELGQLQQQLEQKEQEASKLKEEVERLQGQKRELLNCASVGNQGVASLKERVWEL 1684

  Fly   458 ELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIR------ 516
            |...||.|:     ...:.|...|..||..||...:..:.:...::...:::||:|.:|      
  Rat  1685 ESNALEQEK-----VRSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEELEDVRQSCQKR 1744

  Fly   517 -KQTSIEIE-------------------------QLNARVIEAETRLKTEVTR---IKKKLQIQI 552
             :|..:::|                         |:..|..:.|.||:.::.|   :...:|:.:
  Rat  1745 LRQLEMQLEQEYEEKQAALHEKHDLEGLIGTLCDQIGHRDFDVEKRLRRDLRRTHALLSDVQLLL 1809

  Fly   553 TELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEE 617
            ..:|.|     ||:|..:::.|..| ||.:.:|..||..:..:.              |..:||.
  Rat  1810 ATIEDS-----KTSISKEELEKVHS-QLEQSEAKCEDALKTQKV--------------LTADLES 1854

  Fly   618 VRSHLDSANRAKRTVE-----LQYEEA--ASRINE-------LTTANVSLVSIKSKLEQELSVVA 668
            :.|.|::..|:|..|:     ||:|.|  ..||:|       |...:..|::..:....::..:.
  Rat  1855 MHSELENVTRSKSLVDEQLYRLQFERADLLKRIDEDQDDLNGLMQKHKDLIAQSAADIGQIQELQ 1919

  Fly   669 SDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELN 733
            ...||..||.:...|:.|..|:.::: :||...|:..:.:.|.|...||.:.:...::::..|: 
  Rat  1920 LQLEEAKKEKQKLWEQLQVAQLRIQY-LEQSTVERAIVSRQEAIICDLESKTEFQKVQMKRFEV- 1982

  Fly   734 AVAGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNLILLQDAL 798
                       |..|:||..:::.||..|..:.....|:..:..::.|.:.:.:.:.|:..::..
  Rat  1983 -----------LVIRLRDSMIKMGEELSRAVKAEAQQRENSQYYQQRLEELKAEMQELVQREEEA 2036

  Fly   799 DKSTAKINIYRRQLSE-QEGVSQQTTTRVRRFQRELEAAEDRADTAESSLNIIRAKHRTFVTTST 862
            .:...::..|..:|:. ::.:.....|.:||. .:|:||.:...:::|....:    :|.|..|:
  Rat  2037 SRRCMEMEKYVEELAAVRQTLQTDLETSIRRI-ADLQAALEEVASSDSDTESV----QTAVDCSS 2096

  Fly   863 VPGSQ 867
            ..|.:
  Rat  2097 RSGKE 2101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PrmNP_523982.2 Myosin_tail_1 <34..853 CDD:279860 195/899 (22%)
Myo18bXP_006249639.1 MYSc 558..1324 CDD:214580 26/87 (30%)
MYSc_Myo18 577..1312 CDD:276837 24/75 (32%)
KASH_CCD 1390..1579 CDD:291334 49/189 (26%)
GBP_C <1683..1766 CDD:303769 18/87 (21%)
coiled coil 1737..1751 CDD:293879 2/13 (15%)
Rab5-bind 1788..2082 CDD:286404 67/327 (20%)
DUF3585 <1889..2033 CDD:304905 28/156 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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