DRSC/TRiP Functional Genomics Resources

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Protein Alignment h and her4.2

DIOPT Version :9

Sequence 1:NP_001014577.1 Gene:h / 38995 FlyBaseID:FBgn0001168 Length:337 Species:Drosophila melanogaster
Sequence 2:NP_001154881.1 Gene:her4.2 / 100148329 ZFINID:ZDB-GENE-060815-1 Length:152 Species:Danio rerio


Alignment Length:146 Identity:46/146 - (31%)
Similarity:66/146 - (45%) Gaps:31/146 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KETPLKSDRRSNKPIMEKRRRARINNCLNELKTLIL-DATKKDPARHSKLEKADILEKTVKHLQE 87
            :||.|.:..|  ||::||.||.|||:.:.:||||:. :..|:.|  .|:.|||||||.|:..|:.
Zfish    12 RETLLTNKLR--KPMVEKIRRERINSSIEKLKTLLAQEFIKQQP--DSRQEKADILEMTLDFLRR 72

  Fly    88 LQRQQAAMQQAADPKIVNKFKAGFADCVNEVSRFPGIEPAQRR------RLLQHL-------SNC 139
            .|:..||..             |.:.||.|...|....|.|.:      :|..|:       :..
Zfish    73 SQKSSAAGD-------------GRSRCVQEAVSFLSQCPVQTQSHTRLMKLFLHMQTPADQHTRV 124

  Fly   140 INGVKTELHQQQRQQQ 155
            .|...||.|.....:|
Zfish   125 DNPQTTETHANSSAKQ 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hNP_001014577.1 HLH 29..88 CDD:238036 26/59 (44%)
ORANGE 106..141 CDD:128787 9/47 (19%)
her4.2NP_001154881.1 HLH 19..75 CDD:238036 26/59 (44%)
ORANGE 77..123 CDD:128787 11/58 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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