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Protein Alignment Zasp66 and Ldb3

DIOPT Version :9

Sequence 1:	NP_729395.2	Gene:	Zasp66 / 38988	FlyBaseID:	FBgn0035917	Length:	430	Species:	Drosophila melanogaster
Sequence 2:	XP_006252699.3	Gene:	Ldb3 / 498587	RGDID:	1564875	Length:	771	Species:	Rattus norvegicus

Alignment Length:	489	Identity:	99/489 - (20%)
Similarity:	150/489 - (30%)	Gaps:	125/489 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 LPTSYRPQP--TPKPPL----------------------VPLPSPCRRRSSSGLKKRVHFADEQN 65
            |..|.||.|  |..||:                      .|.||| ..|:|.|....:.|.|..:
  Rat   125 LQKSKRPIPISTTAPPIQSPLPVIPHQKDPSLDTNSSLATPSPSP-EARASPGTSGTLEFGDTFS 188

  Fly    66 VG-----------------VQVGSP---AHGELLRGDIISK--------------IGEYDARDLS 96
            ..                 :.:|||   |..|..:|.:..|              ||.|.|..|.
  Rat   189 SSFSQTSVCTSHMEASGPVLPLGSPVAKASSEGTQGSVSPKVLPGPSQPRLYNNPIGLYSAETLR 253

  Fly    97 H-ADAQQL-FRGAGNEIRLV----------------VHRDNKIAYTQGATQ-EAGPGSRSNSTLP 142
            . |...|: .||..:...|:                |::  .:..||...: ||...:|.:|.|.
  Rat   254 EMAQMYQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQ--AVIKTQSKPEDEADEWARRSSNLQ 316

  Fly   143 PVTPDLMPHRGPSPFLPGPSHFERALQ---LPVDTLP----QTVFPQLNSSGGYEVPSTVFSPKP 200
            ..:..::.....:.::..|.  |.||:   .|::..|    |...|.|.:|......::..:..|
  Rat   317 SRSFRILAQMTGTEYMQDPD--EEALRRSSTPIEHAPVCTSQATSPLLPASAPSPAAASPIAASP 379

  Fly   201 TRDHQQDVDEEQAAIVNQPYRTTPLVLPGAKVKKDAPTTESYLRHYPNPAVRAHPGHDYHDSIMK 265
            |      :....||.........|...|   |:...|...:|     :||....|....|.|..:
  Rat   380 T------LATAAAAHAVAASAAGPASSP---VENPRPQASAY-----SPAAATSPAPAAHTSYSE 430

  Fly   266 QRVADTMLHKVVGSEADTGRVFHKQFNSPIGLYSNNNIEDTIRSTVPFATSESNRLKDS------ 324
            ...|.....:||.:.:....|:.....||.......|...|     |:..|.:.....|
  Rat   431 GPAAPAPKPRVVTTASIRPSVYQPVPASPYSPSPGANYSPT-----PYTPSPAPAYTPSPAPTYT 490

  Fly   325 ----PLHRPLPTKLNGYKKTVQYDPRNSETYRAIQEEGGYSNYGQSSPQEVTIPVQTKVYQPNRL 385
                |.:.|.|...........|:|..|..|     .||.|. ..|.|..||....::.:.|.:.
  Rat   491 PSPAPTYSPSPAPAYTPSPAPNYNPTPSAAY-----SGGPSE-SASRPPWVTDDSFSQKFAPGKS 549

  Fly   386 VPGKKPVSAPVSRPPYNVVNTHDENIRQSGSFNR 419
            .......:.|...|.||........:.: |:|.|
  Rat   550 TTSVSKQTLPRGAPAYNPTGPQVTPLAR-GTFQR 582

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.