DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and MSB4

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_014529.1 Gene:MSB4 / 854037 SGDID:S000005472 Length:492 Species:Saccharomyces cerevisiae


Alignment Length:397 Identity:76/397 - (19%)
Similarity:126/397 - (31%) Gaps:134/397 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 WKLLLGYLGPRRSSWTTTLAQKR--------ALYKQFIEELV------LPPGHSSNRASVDGGDG 96
            |.....|...|:..|...|.:.:        .:|....:||.      :|.....|......|..
Yeast   100 WTEYNRYTERRKKKWENFLLKNKIELHNDNPLVYPARTDELSKFVRKGIPAEWRGNAWWYFAGGQ 164

  Fly    97 DKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQIDKDVRRLCPDISFFQQPTDYPCEIVVHSK 161
            .::|: .||:.|...|:..|.|.:.  .|.|   .|::|:.|..||...|.:.:        ...
Yeast   165 RQLDA-NVGVYDRLKSDCREGAVSG--KDME---AIERDLYRTFPDNIHFHKES--------FQN 215

  Fly   162 GEHGRRLHERVVPAVLSSANVERKGLGMTKINLITKRSVENYAAMEEGQEAHWEVVQRILFIYAK 226
            ||          ||::.|                                     ::|:|..::.
Yeast   216 GE----------PAIIRS-------------------------------------LRRVLMAFSV 233

  Fly   227 LNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTALMSEIRDFFIKTLDDAEGG-- 289
            .:...||.|.||.:||.:...|           .|...|:....:..:......::  |.||.  
Yeast   234 YDKTIGYCQSMNFLVGLLLLFM-----------EEEKAFWMLVIITGKYLPGVYES--DLEGANV 285

  Fly   290 --------IKFMMARLSNMLKSKDL----SIYELLRSQELHPQYYSFR--WLTLLLSQEF----- 335
                    ||..:..:.:.::|..:    |..::  |.....:.|..|  .|||..:..|     
Yeast   286 DQGVLVLCIKEYLPEIWSHIESSYMNGNGSTDQI--SGPASGEEYLCRLPTLTLCTASWFMSCFV 348

  Fly   336 ---PLPDVLRIWDSVFADEQRFDFLIKICCSMILIQREAILE------------------NDFAS 379
               |:...|||||.:|.:|..  ||.|:...::.:.....||                  ||..|
Yeast   349 GVVPIETTLRIWDCLFYEESH--FLFKVALGILKLSESEFLESKSQKLFRQYSSYTFGGSNDSDS 411

  Fly   380 NVKLLQN 386
            ..|.|:|
Yeast   412 TFKRLKN 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 37/205 (18%)
MSB4NP_014529.1 COG5210 <53..461 CDD:227535 76/397 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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