DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and rabgap1l

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_021325262.1 Gene:rabgap1l / 555272 ZFINID:ZDB-GENE-050208-389 Length:1069 Species:Danio rerio


Alignment Length:374 Identity:70/374 - (18%)
Similarity:133/374 - (35%) Gaps:94/374 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 AQKRALY---KQFIEELVLPPGHSSNRASVDGGDGDKV----------DSGGVG---LQDHPLSE 113
            |.:|..|   |.|.|...|    ...:.||.|...|.:          :.|...   ||.....|
Zfish   448 ANERFWYFSRKAFCETFYL----KLKQGSVKGSQDDMMYEVVSLEKHSECGSQARGRLQSPTEEE 508

  Fly   114 GPESAWNTFFNDNEFLLQIDKDVRRLCPD---------ISFFQQPTDYPCEIVVHSKGEHGRRLH 169
            .||..     :|:| :.....||.:.||:         ::.:|.      .::...||     |.
Zfish   509 EPEED-----SDSE-ISSGTGDVSKDCPEKILESWGGILNRWQG------NLLTRPKG-----LS 556

  Fly   170 ERVVPAV-----------LSSANVERKGLGMTKINLITKRSVE----------NYAAME------ 207
            ..|.|.:           ||..:.::..|...:| ||||.|.:          .:.|.:      
Zfish   557 ALVKPGIPEALRAEVWQLLSGCHNDQALLEQYRI-LITKESAQEAVITRDIHRTFPAHDYFKDSG 620

  Fly   208 -EGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTAL 271
             :||::.:::.:    .|:..:...||.||.:.:...:         |.:....:|.|.......
Zfish   621 GDGQDSLYKICK----AYSVYDEEIGYCQGQSFLAAVL---------LLHMPEEQAFCVLVKIMF 672

  Fly   272 MSEIRDFFIKTLDDAEGGIKFMMARLSNMLKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFP 336
            ...:|:.:....:|..  .||.  :|..:|:.....::...:...|....|:.:|...|.:.:||
Zfish   673 NYGLRELYRNNFEDLH--CKFY--QLERLLQELLPDLWSHFQELNLEAHMYASQWFLTLFTAKFP 733

  Fly   337 LPDVLRIWDSVFADEQRFDFLIKICCSMILIQREAILENDFASNVKLLQ 385
            |..|..|.|.:..  :..:.:..:..:::...:|.:|:.||...:|..:
Zfish   734 LCMVFHITDLLLC--EGLNIIFNVALALLKTSKEDLLQADFEGALKFFR 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 34/198 (17%)
rabgap1lXP_021325262.1 PTB_Rab6GAP 157..285 CDD:269922
DUF3694 319..450 CDD:315198 1/1 (100%)
RabGAP-TBC 565..768 CDD:306939 37/222 (17%)
SMC_N 784..>1042 CDD:330553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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