DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and Tbc1d5

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_008764990.1 Gene:Tbc1d5 / 501088 RGDID:1561626 Length:827 Species:Rattus norvegicus


Alignment Length:440 Identity:109/440 - (24%)
Similarity:176/440 - (40%) Gaps:127/440 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FKARVKEFEDVLAGPQDLIDLKQLRKLAFNGVPDVQSFRALSWKLLLGYLGPRRSSWTTTLAQKR 68
            |.:.::|::|:.....   .|..:|:...||......||::.|||.|..|...:|.|.:.:.:.|
  Rat    52 FSSYMREWDDLFVNNN---YLAAVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIKELR 113

  Fly    69 ALYKQFIEELVLPPGHSSNRASVDGGDGDKVDSGGVGLQD----HPLSEGPESAWNTFFNDNEFL 129
            :.|.. |:|:     |.:|...|            ||.||    :|||:...|.||.||.|.|..
  Rat   114 SWYSN-IKEI-----HITNPRKV------------VGQQDLMINNPLSQDEGSLWNKFFQDKELR 160

  Fly   130 LQIDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKINL 194
            ..|::||||..|::.||||                               .||.:          
  Rat   161 SMIEQDVRRTFPEMQFFQQ-------------------------------ENVRK---------- 184

  Fly   195 ITKRSVENYAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRA- 258
                                 ::..:||.||:.|....|.|||:|::.||.:.:..|......| 
  Rat   185 ---------------------ILTDVLFCYARENEQLLYKQGMHELLAPIIFTLHCDHQAFLHAS 228

  Fly   259 ----------------HAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARL---------- 297
                            :.|.|.:..|:.||.....:|.....|.:.|.:.:|..:          
  Rat   229 ESAQPSEEMKTLLNPEYLEHDAYAMFSQLMETAEPWFSTFEHDGQKGKETLMPPIPFARPQDLGP 293

  Fly   298 ------------SNMLKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSVFAD 350
                        .::||..|..:|..|...|:.||.|..||:.||..:||||.|:|.:||::|||
  Rat   294 TVAIVTKVNQIQDHLLKKHDTELYMHLNRLEIPPQIYGLRWVRLLFGREFPLQDLLVVWDALFAD 358

  Fly   351 EQRFDFLIKICCSMILIQREAILENDFASNVKLLQNYPPI-DINVVIAHA 399
            ......:..:..:|:|..|:|::.:::.:.:.||.:||.| ||:.:|..|
  Rat   359 GLHLSLVDYVFTAMLLYIRDALISSNYQTCLGLLMHYPLIGDIHSLILKA 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 51/220 (23%)
Tbc1d5XP_008764990.1 TBC 79..381 CDD:214540 94/381 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001234
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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