DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and tbc1d16

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001006076.2 Gene:tbc1d16 / 450056 ZFINID:ZDB-GENE-041010-179 Length:717 Species:Danio rerio


Alignment Length:379 Identity:88/379 - (23%)
Similarity:132/379 - (34%) Gaps:146/379 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QLRKLAFNGVPDVQSFRALSWKLLLGY-----LGPRRSSWTTTLAQKRALYKQFIEELVLPPGHS 85
            :|||..|.|..| .|.|...|..||.|     ....|.:|.   .|||..|:.            
Zfish   360 KLRKAIFFGGID-PSIRGEVWPFLLHYYSYDSTSEEREAWR---LQKRGEYQD------------ 408

  Fly    86 SNRASVDGGDGDKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQIDKDVRRLCPDISFFQQPT 150
                                :|...||..||. .:.|:...:|  .:||||.|......||    
Zfish   409 --------------------IQQRRLSMSPEE-HSEFWRKVQF--TVDKDVVRTDRSNMFF---- 446

  Fly   151 DYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKINLITKRSVENYAAMEEGQEAHWE 215
                      :||              ::.||                                |
Zfish   447 ----------RGE--------------NNPNV--------------------------------E 455

  Fly   216 VVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTALMSEIRDFFI 280
            :::|||..||..||..||.|||:::|.|:         || ....|:|.|:||..||.  ...||
Zfish   456 IMRRILLNYAVFNPDMGYCQGMSDLVAPL---------LT-EIQDESDTFWCFVGLME--NTIFI 508

  Fly   281 KTLDDAEGGIKFMMARLSNMLKSKDLSIYELLRSQELHPQY---------------YSFRWLTLL 330
            .:..|.:...:.|..|             ||||.  :.|::               :..||:.|.
Zfish   509 SSPRDEDMERQLMYLR-------------ELLRL--MLPRFHQHLTRLGEDGLQLLFCHRWVLLC 558

  Fly   331 LSQEFPLPDVLRIWDSVFADEQRFDFLIKICCSMILIQREAILENDFASNVKLL 384
            ..:|||..:.||:|::.:|..|...|.:.:|.::|::..:.:.|...|::..||
Zfish   559 FKREFPDAEALRMWEACWAHYQTDYFHLFLCVAIIVLYGDDVTEQQLATDQMLL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 48/196 (24%)
tbc1d16NP_001006076.2 TBC 368..596 CDD:214540 80/353 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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