DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and GAPcenA

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster


Alignment Length:368 Identity:77/368 - (20%)
Similarity:125/368 - (33%) Gaps:121/368 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 EELVLPPGH-------------------SSNRASVD-------GGDGDKVDSGGVGLQDHPLSEG 114
            ||:...|||                   ||:.||::       ..|||:....|.|......|:.
  Fly   561 EEITEQPGHQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGDEPLLSGTGEVSKDCSQD 625

  Fly   115 PESAWNTFFN--DNEFLLQIDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGRRLHERVVPAVL 177
            ....|:....  |:|      |..:.|.|.:                       ||.   ||..|
  Fly   626 TLDEWDPILREWDSE------KRPKNLAPLV-----------------------RLG---VPEAL 658

  Fly   178 SS------ANVERKGLGMTKIN-----LITK-------------RSVENYAAMEE----GQEAHW 214
            ..      ||||    |..::|     ||||             |:...:...:|    ||:|.:
  Fly   659 REKIWQKLANVE----GRMEMNDKYKILITKETKCETVIQRDIHRTFPAHKCFKEIGGSGQDALF 719

  Fly   215 EVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTALMSE--IRD 277
            :|.:    .||..:...||.||::.|...:...|           .|.|.|....|||.:  :||
  Fly   720 KVSK----AYAVHDSEVGYCQGLSFIAASLLLHM-----------PEEDAFCVLVALMYDYGLRD 769

  Fly   278 FFIKTLDDAEGGIKFMMAR---LSNMLKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFPLPD 339
            .:       :.|.:.:..|   |..::|.:...::|...:..:....|:.:|...|.:..|||..
  Fly   770 LY-------KAGFEVLYLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYTARFPLCF 827

  Fly   340 VLRIWDSVFADEQRFDFLIKICCSMILIQREAILENDFASNVK 382
            |..:.|....|  ....|.::..:::.|....:.:.||...:|
  Fly   828 VFHVLDVFLLD--GLPVLFQVAVTLLSICESDLRQLDFEGILK 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 43/208 (21%)
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 53/261 (20%)
Phage_Gp23 <914..991 CDD:287621
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456571
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22957
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.930

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