DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPsec and Tbc1d2b

DIOPT Version :10

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_063121637.1 Gene:Tbc1d2b / 315880 RGDID:1307436 Length:971 Species:Rattus norvegicus


Alignment Length:245 Identity:53/245 - (21%)
Similarity:102/245 - (41%) Gaps:53/245 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 HGRRLHERVVP----AVLSSANVERKGLGMTKINLITKRSVENYAAMEEGQEAHWEVVQRILFIY 224
            |.|:..:.:.|    |:|..| :|::.....:|.|...|::.|............:.::.:|..:
  Rat   679 HTRKFKDSMEPGYFQALLQKA-LEKQNPASKQIELDLLRTLPNNKHYSSPTSEGIQKLRNVLLAF 742

  Fly   225 AKLNPGQGYVQGMNEIVG-PIYYVMASDPDLTYRAHAEADCFFCFTALMSEI--RDFFIKTLDDA 286
            :..||..||.||:|.:|. .:.|:            .:.|.|:|...::...  ||::.|||   
  Rat   743 SWRNPDIGYCQGLNRLVAVALLYL------------EQEDAFWCLVTIVEVFMPRDYYTKTL--- 792

  Fly   287 EGGIKFMMARLSNMLKSKDLSIYELLRSQEL-----HPQYY-------SFRWLTLLLSQEFPLPD 339
                      |.:.:   |..::..|.|::|     |.:.|       :|.|. |::..:..:.|
  Rat   793 ----------LGSQV---DQRVFRDLLSEKLPRLHTHFEQYKVDYTLITFNWF-LVVFVDSVVSD 843

  Fly   340 VL-RIWDSVFADEQRFDFLIKICCSMILIQREAILE-NDFASNVKLLQNY 387
            :| :||||...:..:..|  :...::...:.|.||: .|..|..|.|:.:
  Rat   844 ILFKIWDSFLYEGPKVIF--RFALALFKYKEEEILKLQDSMSIFKYLRYF 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 40/197 (20%)
Tbc1d2bXP_063121637.1 None

Return to query results.
Submit another query.