DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and Sgsm1

DIOPT Version :10

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_063127295.1 Gene:Sgsm1 / 288743 RGDID:1308178 Length:1148 Species:Rattus norvegicus


Alignment Length:400 Identity:82/400 - (20%)
Similarity:152/400 - (38%) Gaps:96/400 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDVLAGPQDLIDLKQLRKLAF----NGVPDVQSFRALSWKLLLGYLGPRRSSWTTTLAQKRALYK 72
            |..|:....::|:::.....|    :.|.|.||..|.:.:    ...||.........:...|..
  Rat   784 EPSLSTEDSVLDVQRSLPAVFRPGDSSVEDGQSSEATTSR----DEAPREELAVQDSLESDLLAN 844

  Fly    73 QFIEELVLPPGH------SSNRASVDGGDGDKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQ 131
            :.:||.:..||.      ..:.|.:||..|:....|....:|: |||.||               
  Rat   845 ESLEEFMSIPGSLDVALPEKDGAMMDGWPGEADKHGRADSEDN-LSEEPE--------------- 893

  Fly   132 IDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKI---- 192
                :..|.|.::..                            ||.||||.|...:..:.:    
  Rat   894 ----MESLFPALASL----------------------------AVTSSANNETSPVSSSGVTYSP 926

  Fly   193 NLITKRSVENYAAMEEGQ---EAHW-------EVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYV 247
            .|:...:|..:...::.|   .::|       |.::.|:..|...:...||||||.:::.|:..:
  Rat   927 ELLDLYTVNLHRIEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVI 991

  Fly   248 MASDPDLTYRAHAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARLSNMLKSKDLSIYELL 312
            :..          ||..|.|||.||..:...|     ...|.:....|.:.::::..|..::||:
  Rat   992 LDD----------EALAFSCFTELMKRMNQNF-----PHGGAMDTHFANMRSLIQILDSELFELM 1041

  Fly   313 RSQELHPQ-YYSFRWLTLLLSQEFPLPDVLRIWDSVFADE--QRFDFLIKICCSMILIQREAILE 374
            .....:.. |:.:||..|...:|....||..:|::::|.:  ....:::.|..:::.:.|:.|||
  Rat  1042 HQNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAAKHVSSAHYVLFIALALVEVYRDIILE 1106

  Fly   375 N--DFASNVK 382
            |  ||...:|
  Rat  1107 NNMDFTDIIK 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 39/198 (20%)
Sgsm1XP_063127295.1 None

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