DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and SPAC1952.17c

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_594819.2 Gene:SPAC1952.17c / 2542551 PomBaseID:SPAC1952.17c Length:619 Species:Schizosaccharomyces pombe


Alignment Length:454 Identity:166/454 - (36%)
Similarity:248/454 - (54%) Gaps:79/454 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FKARVKEFEDVLAGPQDLIDLKQLRKLAFNGVPDVQSFRALSWKLLLGYLGPRRSSWTTTLAQKR 68
            :|.|:::|:|:| ..::.|.|..|..|...|:||..|.||.:|.|:|.:|...||:|.:.|.:.|
pombe     3 YKQRIEKFKDIL-NSEEPISLPGLCSLCIQGIPDEYSLRAKAWMLMLEFLPTDRSNWQSVLEKHR 66

  Fly    69 ALYKQFIEELVLPPGHSSNRASVDGGDGDKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQID 133
            ..|..|::||::.|..........|.:           .||||:...:|.|..:|:||:.|.|||
pombe    67 KTYTSFVQELLIDPWRKLTLHEESGEN-----------SDHPLNTSDDSKWKEYFDDNQILEQID 120

  Fly   134 KDVRRLCPDISFFQQPTDYPCEIVVHSKGEH-------------GRRLH---------ERVVPAV 176
            ||:||..||:||||..::...:..|::..|:             |::|:         .:..|..
pombe   121 KDIRRTLPDLSFFQGKSEINKKPSVNNVSENISVNTEDDKVEEVGQKLNYTKITSIDQSQETPVH 185

  Fly   177 LS-------------------------SANVERKGLGMTKINLITKRSVENYA-AMEEGQEAHWE 215
            ||                         |.:.....|...:.::.:||::...| |.|.....|.|
pombe   186 LSTIDFSKFQEECHLVLQGRIYRLENESTSSSTTALSTPRQSMDSKRTINAEAIAGENKLGLHRE 250

  Fly   216 VVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAH--AEADCFFCFTALMSEIRDF 278
            ..:||||||||||||.|||||||||:.|:|||:|:||  ||..:  .|.|.||.||.:|.::||.
pombe   251 AAERILFIYAKLNPGIGYVQGMNEILAPLYYVLATDP--TYENYYLCECDAFFLFTQMMVQVRDL 313

  Fly   279 FIKTLD-DAEGGIKFMMARLSNMLKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFPLPDVLR 342
            :.|||| |::.||.|:|::.:..||..|..::|.|..:::||.||||||.|.|||||||||||:|
pombe   314 YEKTLDHDSDHGIHFLMSKFTERLKKYDYELWENLEEKQIHPTYYSFRWFTCLLSQEFPLPDVIR 378

  Fly   343 IWDSVFADEQR--------------FDFLIKICCSMILIQREAILENDFASNVKLLQNYPPIDI 392
            :|||:.||:.:              :|||:..|||:::..||:|||.:||.::||||.:..:|:
pombe   379 LWDSIIADQMKARLFGKNDDGFNGAYDFLMDFCCSILIELRESILERNFADSIKLLQAHFNVDM 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 94/199 (47%)
SPAC1952.17cNP_594819.2 COG5210 97..619 CDD:227535 134/348 (39%)
RabGAP-TBC 246..423 CDD:278964 89/178 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 171 1.000 Domainoid score I883
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10068
Inparanoid 1 1.050 282 1.000 Inparanoid score I667
OMA 1 1.010 - - QHG54276
OrthoFinder 1 1.000 - - FOG0001234
OrthoInspector 1 1.000 - - oto101713
orthoMCL 1 0.900 - - OOG6_102218
Panther 1 1.100 - - LDO PTHR22957
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1952
SonicParanoid 1 1.000 - - X4286
TreeFam 1 0.960 - -
1413.860

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