DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and tbc1d13

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001120521.1 Gene:tbc1d13 / 100145657 XenbaseID:XB-GENE-961035 Length:403 Species:Xenopus tropicalis


Alignment Length:391 Identity:199/391 - (50%)
Similarity:264/391 - (67%) Gaps:15/391 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SIFKARVKEFEDVLAGPQDLIDLKQLRKLAFNGVPDVQSFRALSWKLLLGYLGPRRSSWTTTLAQ 66
            |..|.::.||:.:|:  :..|:||.||:|.|||:|.....|.|.||:||.||...:|.|.|.|.:
 Frog     3 SAHKNKIAEFQSILS--ESHINLKVLRELCFNGIPFEGGIRCLCWKVLLNYLPRDQSLWDTVLQK 65

  Fly    67 KRALYKQFIEELVLPPGHSSNRASVDGGDGDKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQ 131
            :|..|..|:.|:::.||.:..:..|...|        |.|:||||:..|:|.|||:|.|||.|||
 Frog    66 QRETYAHFLREMIIQPGIAKVKFGVSRED--------VTLEDHPLNPNPDSQWNTYFKDNEVLLQ 122

  Fly   132 IDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKINLIT 196
            |||||||||||.|||..||||||.:::..:.|: ..|.:||....|.|..|.|...|:|.::...
 Frog   123 IDKDVRRLCPDFSFFLNPTDYPCLLIMDPENEY-ETLRKRVEQTTLKSQTVARNRSGVTNVSSPL 186

  Fly   197 KRSVEN----YAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYR 257
            |.|..|    |..:..|.|||||||:||||||||||||..||||||||||||||..|::|:..::
 Frog   187 KSSASNSLGDYNPLPNGSEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPIYYTFATNPNSDWK 251

  Fly   258 AHAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARLSNMLKSKDLSIYELLRSQELHPQYY 322
            .|||||.|||||.||:||||.|||:|||::.||...|.::.:.||.:|..:|..|:.|.:.||::
 Frog   252 EHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITSKMEKVYSTLKEEDEELYLKLQEQNIKPQFF 316

  Fly   323 SFRWLTLLLSQEFPLPDVLRIWDSVFADEQRFDFLIKICCSMILIQREAILENDFASNVKLLQNY 387
            :||||||||||||.||||:|||||:||||.|||||:.:.|:|:::.|..:||.||..|::|||:|
 Frog   317 AFRWLTLLLSQEFVLPDVIRIWDSLFADENRFDFLLMVSCAMLILIRNQLLEGDFTINMRLLQDY 381

  Fly   388 P 388
            |
 Frog   382 P 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 106/185 (57%)
tbc1d13NP_001120521.1 TBC 32..367 CDD:214540 177/343 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 210 1.000 Domainoid score I2770
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10068
Inparanoid 1 1.050 397 1.000 Inparanoid score I1907
OMA 1 1.010 - - QHG54276
OrthoDB 1 1.010 - - D350831at33208
OrthoFinder 1 1.000 - - FOG0001234
OrthoInspector 1 1.000 - - oto104649
Panther 1 1.100 - - LDO PTHR22957
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1952
SonicParanoid 1 1.000 - - X4286
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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