DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPsec and tbc1d9b

DIOPT Version :9

Sequence 1:NP_648245.2 Gene:GAPsec / 38987 FlyBaseID:FBgn0035916 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001107313.1 Gene:tbc1d9b / 100135104 XenbaseID:XB-GENE-989754 Length:1259 Species:Xenopus tropicalis


Alignment Length:374 Identity:81/374 - (21%)
Similarity:128/374 - (34%) Gaps:110/374 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 EELVLPPGHSSNRASV-------DGGDGDKVDSGGVGLQDHPLSEG----------PESAWNTFF 123
            ||...|...||...|.       :|.|......|.:.|....::|.          .|.:||..|
 Frog   421 EEATNPSPSSSTDVSPTFSTPQNNGSDAPTASHGLLKLFQREITEDMKPKWDKEKMKEESWNIHF 485

  Fly   124 NDNEFLLQIDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGR---------RLHERVV-PAVLS 178
            .:..         |.:|      ...|....|:|:....|:.|         ..:|.|. |... 
 Frog   486 LEYG---------RGMC------MYRTSKTRELVLKGIPENLRGELWLLFSGASNEMVTHPGYY- 534

  Fly   179 SANVERKGLGMTKINLIT-------KRSVENYAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQG 236
             |::..|.:|  :.||.|       .||:..:.|.:  .|.....::|:|..||..||..||.|.
 Frog   535 -ADLVEKSMG--RCNLATDEIERDLHRSMPEHPAFQ--NELGIAALRRVLTAYAFRNPNIGYCQA 594

  Fly   237 MNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTALMSE-IRDFF----IKTLDDA---EGGIKFM 293
            || ||..:..:..:          |.:.|:...:|... :.|::    :..|.|.   |...:..
 Frog   595 MN-IVTSVLLLYCN----------EEEAFWLLVSLCEHMLPDYYNTRVVGALVDQGVFEELTRLY 648

  Fly   294 MARLSNMLKSKDLSIYELLRSQELHPQYYSFRW-LTLLLSQEFPLPDVLRIWDSVFADEQRFDFL 357
            :.:||.  |.::|.:...:          |..| |||.|| ..|....:.:.|..|.:.      
 Frog   649 LPQLSE--KMQELGVISTI----------SLSWFLTLFLS-VMPFESAVVVVDCFFFEG------ 694

  Fly   358 IKICCSMILIQREAILEN-----DFASNVKLLQNY-----------PPI 390
            ||:...:.|...||.:|:     |....:.:|..|           |||
 Frog   695 IKLILQLSLAVLEANMESLMNCMDEGEAMTILGRYLDNVLNKQSVSPPI 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPsecNP_648245.2 TBC <191..373 CDD:214540 46/197 (23%)
tbc1d9bNP_001107313.1 PH-GRAM1_TCB1D9_TCB1D9B 154..251 CDD:275420
PH-GRAM2_TCB1D9_TCB1D9B 299..394 CDD:270161
TBC 504..714 CDD:214540 56/245 (23%)
EFh <854..905 CDD:298682
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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