DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5989 and letmd1

DIOPT Version :9

Sequence 1:NP_648242.1 Gene:CG5989 / 38984 FlyBaseID:FBgn0017429 Length:436 Species:Drosophila melanogaster
Sequence 2:XP_017209077.1 Gene:letmd1 / 567014 ZFINID:ZDB-GENE-080723-8 Length:369 Species:Danio rerio


Alignment Length:298 Identity:92/298 - (30%)
Similarity:149/298 - (50%) Gaps:15/298 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 KNYDKVLEKNFPKAMQLYRVFFDG----VKDF---FGDMKRFLKIA-RIANDSPQGIRALNRQEL 195
            :.|::.|::.||:...||:.|..|    .|.|   |.|.|...||. |:.:|...... |..:::
Zfish    70 EKYERFLQRRFPRFFVLYQTFMRGFLLFCKGFRLLFEDGKEVQKIVFRMISDKTSHAN-LPYRDM 133

  Fly   196 ELYMQMPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQSYYMKRRLCN 260
            |...|:.||::|..|.:|....|...|..|.|::.|||..|..|||||||..:||..|..:|..:
Zfish   134 EKIRQVRRDLIKAIPLVILSIPPFANYLVFMLMYLYPRQLLIRHFWTPQQLVDFQVAYHNQRARH 198

  Fly   261 NKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPEMLIDVKDIFAEGPYSLLGMSRKHVR 325
            :..|.:.|:....:...........::..::.||.||....:..|:.:|:..|..:..|....:|
Zfish   199 HWAVVKGLESTSNSVQDTRLKRHLLELCSKVRSGVHPVVSDVHAVRTLFSGPPLGIKKMYANQMR 263

  Fly   326 NLVNL----HGLPSSIFKRHRLHEHAFLVHYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLS 386
            :|..|    ..|| :.:...||:.||..:..:|:||.|. |:|.|....||.:|::|||||:.||
Zfish   264 HLCPLLFLTPRLP-AFWISGRLNSHALELMQLDRAIIRL-GLHQLNDSELREACFVRGLNPERLS 326

  Fly   387 SEAMIEWLRKWVKVSTSIQGEHITLFLHLPILLGYNHP 424
            ...:.|||.:|::.|..::....:|:||..:||..|:|
Zfish   327 PGQLREWLTQWLQFSAHLRESETSLYLHCMVLLTVNYP 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5989NP_648242.1 LETM1 150..403 CDD:285063 82/264 (31%)
letmd1XP_017209077.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581749
Domainoid 1 1.000 131 1.000 Domainoid score I5148
eggNOG 1 0.900 - - E1_KOG4263
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9128
Inparanoid 1 1.050 146 1.000 Inparanoid score I4404
OMA 1 1.010 - - QHG49830
OrthoDB 1 1.010 - - D330259at33208
OrthoFinder 1 1.000 - - FOG0007243
OrthoInspector 1 1.000 - - oto41029
orthoMCL 1 0.900 - - OOG6_107505
Panther 1 1.100 - - LDO PTHR14009
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4074
SonicParanoid 1 1.000 - - X5346
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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