DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5989 and letmd1

DIOPT Version :9

Sequence 1:NP_648242.1 Gene:CG5989 / 38984 FlyBaseID:FBgn0017429 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_001016022.1 Gene:letmd1 / 548776 XenbaseID:XB-GENE-962658 Length:347 Species:Xenopus tropicalis


Alignment Length:340 Identity:101/340 - (29%)
Similarity:158/340 - (46%) Gaps:40/340 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 QP---TPSKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFPKAMQLYRV 158
            ||   :.:.||    :..|..:.||             .:|.|  :.|:..||:.||....||..
 Frog    29 QPCHLSTNSKP----KSMLSLIASK-------------AKYAN--EKYEHFLERKFPNFYLLYST 74

  Fly   159 FFDGVKDFFGDMKRFLKIARIANDSPQGI--RALNRQELELYMQMPRDMMKVAPALIGCSLPMVG 221
            |..|.:....:.|...:|.:..|.  |||  ..|..:|:|...|..||::|.||.:|....|...
 Frog    75 FMKGFRMLMTEAKEVGRIKQRMNH--QGIPFHQLPYREMEKLRQFRRDIIKAAPVVIISIPPFAN 137

  Fly   222 YAFFPLVFYYPRSFLTAHFWTPQQRSEFQSYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFAD 286
            |..|.|::::||..|..|||||:||.||...|.:.|:....::...|.:.:...:.....:....
 Frog   138 YLVFVLMYFFPRQLLIRHFWTPKQREEFLDIYHRMRVEAYPEILDGLLNAVPKLSERNLRNQMFQ 202

  Fly   287 ILGQLGSGTHPTPEMLIDVKDIFAEGPYSLLGMSRKHVRNLVNL--------HGLPSSIFKRHRL 343
            :..|:..||||..|.|..|...|:..|   |||.|..|:.:..|        | ||:.:. :|||
 Frog   203 LCTQVQHGTHPQVENLHAVCTAFSGPP---LGMKRLDVQQMKALSRVMFLTPH-LPAFLL-QHRL 262

  Fly   344 HEHAFLVHYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKVSTSIQGEH 408
            ..|...:..:|.|:.:. ||:.|:.:.|:.:||:||||...||.|....||..|:::|:.::...
 Frog   263 GSHICEIQNLDCALLKL-GVNELSEEELKRACYIRGLNSTHLSREDCETWLHCWLQLSSMLKVSE 326

  Fly   409 ITLFLHLPILLGYNH 423
            .:|.||..:||..|:
 Frog   327 ASLLLHCMVLLSANY 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5989NP_648242.1 LETM1 150..403 CDD:285063 82/262 (31%)
letmd1NP_001016022.1 LETM1 66..324 CDD:285063 82/265 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5571
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9128
Inparanoid 1 1.050 135 1.000 Inparanoid score I4450
OMA 1 1.010 - - QHG49830
OrthoDB 1 1.010 - - D330259at33208
OrthoFinder 1 1.000 - - FOG0007243
OrthoInspector 1 1.000 - - oto102891
Panther 1 1.100 - - LDO PTHR14009
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4074
SonicParanoid 1 1.000 - - X5346
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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