DRSC/TRiP Functional Genomics Resources

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Protein Alignment rhea and tlnrd1

DIOPT Version :9

Sequence 1:NP_001246674.1 Gene:rhea / 38978 FlyBaseID:FBgn0260442 Length:2836 Species:Drosophila melanogaster
Sequence 2:NP_988985.1 Gene:tlnrd1 / 394582 XenbaseID:XB-GENE-963885 Length:354 Species:Xenopus tropicalis


Alignment Length:338 Identity:70/338 - (20%)
Similarity:152/338 - (44%) Gaps:24/338 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly  1348 AARGVTESINQLVDASIQSAPGQK------ECDNAMRNIEALRLMLDYPHEPIN-----ELG--Y 1399
            |:.|.:.|....:.:...:.|.:|      :|.|.|:.:..|.|:...| .|::     :||  :
 Frog     2 ASGGGSGSARSSLASGAAAQPRKKLLTICEQCKNKMQLVADLLLLSSEP-RPVSPESSLQLGEAF 65

  Fly  1400 FDCVEQATGKSRNLGYAISEMINNAKQSQHVEFSQSVNNVNDSIQGLIESSSQAAYLIGVSHPSS 1464
            ..|.:....:::.|.....::.:.....:..|...:|..:.|.:..|||.|:.||||..|..|.|
 Frog    66 EKCRDTVIARTKGLSILTHDVQSQLNMGRFAEVGDTVQEMGDLVVSLIELSAHAAYLAAVEVPGS 130

  Fly  1465 VAGRPGIIDQAQLTWAYQGIRQHCDIVSSQQSTK--PQMISALTV-IAKHTSYLCSICRQASMNT 1526
            .|.:||::|:.::|.....:.|.|..:.|....:  ||::..::. ::::...|......||..:
 Frog   131 QAAQPGLVDRYKVTRCRHEVEQSCATLRSVPLAELTPQLLLEVSQNLSRNLKILTDASVAASDKS 195

  Fly  1527 SNPVAKNEFIVLAKQVATATSDLVQDIKAIEEQSAGGSRERLV---DPLLEAVKAVRQYASSSEF 1588
            .:..|:.:|.:..|.::|:.:.|:..::.::...:..||.|..   .||::||.|:..:|:..:|
 Frog   196 RDKFAREQFKLGVKCMSTSATALLACVREVKTSPSDLSRNRCALFSGPLVQAVHALVGFATEPQF 260

  Fly  1589 SSVPAKISAEGRKAQEPVIQAGRGVIDGVVEMVKAAKSLALTPDNPPVW----QQLSMHSTPVSE 1649
            ....|.::.||:..|..::.....|:...|.:.:..:.:....|:....    .:|...:..||:
 Frog   261 LGKAAILNPEGKAVQTAILGGAMSVVSACVLLTQCLRDITQHSDSSSKMTDYKDRLRSSACAVSD 325

  Fly  1650 SVKRLVDNIRDKA 1662
            ....|...:|:::
 Frog   326 GCNLLSQALRERS 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rheaNP_001246674.1 FERM_f0 4..85 CDD:293120
B41 89..322 CDD:214604
FERM_N 92..147 CDD:286467
FERM_M 215..322 CDD:278785
FERM_C_Talin 318..409 CDD:269973
Talin_middle 510..668 CDD:286254
I_LWEQ 686..>778 CDD:302998
Vinculin <874..>1035 CDD:279395
talin-RS 1661..1832 CDD:213393 0/2 (0%)
Tar <1694..2005 CDD:223910
VBS 1859..1982 CDD:286057
I_LWEQ 2392..2534 CDD:279885
tlnrd1NP_988985.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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