DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment se and Gsto1

DIOPT Version :9

Sequence 1:NP_648235.1 Gene:se / 38973 FlyBaseID:FBgn0086348 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001007603.1 Gene:Gsto1 / 114846 RGDID:70952 Length:241 Species:Rattus norvegicus


Alignment Length:235 Identity:95/235 - (40%)
Similarity:136/235 - (57%) Gaps:22/235 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSIYINLTDKPEWLLEKNP 66
            ::.|.|.|||..|....:|.:|:|||||||||||..:||.||.|.:..|.|||.:||||..||||
  Rat     4 ASARSLGKGSAPPGPVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNP 68

  Fly    67 QGKVPALEIVREPGPPVLTESLLICEYLDEQYPLRPLYPRDPLKKVQDKLLIERFRAV---LGAF 128
            .|.||.||..:   ..::|||::.||||||.||.:.|:|.||.:|...|:..|.|..|   :.:|
  Rat    69 FGLVPVLENTQ---GHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSF 130

  Fly   129 FKASDGGD-------LEPFWSGLDIYERELARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRG 186
            .:|....|       |:..:|.|   |..:|::.|.||||....::||:||||.:|||.|:|...
  Rat   131 IRAKRKEDHPGIKEELKKEFSKL---EEAMAKKRTAFFGGNSLSMIDYLIWPWFQRLEALELNEC 192

  Fly   187 EDYNYDQSRFPQLTLWLERMKRDPAVMAFYMEAEVQAEFL 226
            .|:.      |:|.||:..|:.||...:.:::|:...::|
  Rat   193 IDHT------PKLKLWMATMQEDPVASSHFIDAKTYRDYL 226

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
seNP_648235.1 GST_N_Omega 3..95 CDD:239353 47/91 (52%)
GstA 22..215 CDD:223698 86/202 (43%)
GST_C_Omega 109..229 CDD:198293 39/128 (30%)
Gsto1NP_001007603.1 GST_N_Omega 5..94 CDD:239353 47/91 (52%)
GstA 26..214 CDD:223698 85/199 (43%)