| Sequence 1: | NP_000416.1 | Gene: | L1CAM / 3897 | HGNCID: | 6470 | Length: | 1257 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_059041.2 | Gene: | L1cam / 50687 | RGDID: | 619777 | Length: | 1255 | Species: | Rattus norvegicus |
| Alignment Length: | 1260 | Identity: | 1110/1260 - (88%) |
|---|---|---|---|
| Similarity: | 1175/1260 - (93%) | Gaps: | 8/1260 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MVVALRYVWPLLLCSPCLLIQIPEEYEGHHVMEPPVITEQSPRRLVVFPTDDISLKCEASGKPEV 65
Human 66 QFRWTRDGVHFKPKEELGVTVYQSPHSGSFTITGNNSNFAQRFQGIYRCFASNKLGTAMSHEIRL 130
Human 131 MAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYF 195
Human 196 ANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHLVALQGQPL 260
Human 261 VLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAY 325
Human 326 YVTVEAAPYWLHKPQSHLYGPGETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIQRGALI 390
Human 391 LSNVQPSDTMVTQCEARNRHGLLLANAYIYVVQLPAKILTADNQTYMAVQGSTAYLLCKAFGAPV 455
Human 456 PSVQWLDEDGTTVLQDERFFPYANGTLGIRDLQANDTGRYFCLAANDQNNVTIMANLKVKDATQI 520
Human 521 TQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRGDGRDLQELGDSDKYFIEDGRLVIHSLDYSD 585
Human 586 QGNYSCVASTELDVVESRAQLLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDI 650
Human 651 EFEDKEMAPEKWYSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGPGEPSPVSETVVTPEAAPE 715
Human 716 KNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTST 780
Human 781 FVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHL 845
Human 846 RGYNVTYWREGSQRKHSKRHIHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFT 910
Human 911 FSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLRDPEL 975
Human 976 RTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNISATAGENYSVVSWVPKE 1040
Human 1041 GQCNFRFHILFKALGEEKGGA--SLSPQYVSYNQSSYTQWDLQPDTDYEIHLFKERMFRHQMAVK 1103
Human 1104 TNGTGRVRLPPAG-FATEGWFIGFVSAIILLLLVLLILCFIKRSKGGKYSVKDKEDTQVDSEARP 1167
Human 1168 MKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGK 1232
Human 1233 KEKEAAGGNDSSGATSPINPAVALE 1257 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| L1CAM | NP_000416.1 | Ig | 35..130 | CDD:472250 | 79/94 (84%) |
| Ig strand B | 53..57 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 66..70 | CDD:409353 | 2/3 (67%) | ||
| Ig strand E | 93..97 | CDD:409353 | 3/3 (100%) | ||
| Ig strand F | 111..116 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 125..128 | CDD:409353 | 2/2 (100%) | ||
| IgI_2_L1-CAM_like | 140..230 | CDD:409432 | 85/89 (96%) | ||
| Ig strand A | 140..143 | CDD:409432 | 2/2 (100%) | ||
| Ig strand A' | 145..149 | CDD:409432 | 3/3 (100%) | ||
| Ig strand B | 152..160 | CDD:409432 | 7/7 (100%) | ||
| Ig strand C | 167..173 | CDD:409432 | 5/5 (100%) | ||
| Ig strand C' | 176..179 | CDD:409432 | 2/2 (100%) | ||
| Ig strand D | 185..189 | CDD:409432 | 2/3 (67%) | ||
| Ig strand E | 191..195 | CDD:409432 | 2/3 (67%) | ||
| Ig strand F | 206..214 | CDD:409432 | 6/7 (86%) | ||
| Ig strand G | 217..230 | CDD:409432 | 12/12 (100%) | ||
| Ig3_L1-CAM | 248..330 | CDD:409460 | 73/81 (90%) | ||
| Ig strand B | 260..264 | CDD:409460 | 2/3 (67%) | ||
| Ig strand C | 273..277 | CDD:409460 | 3/3 (100%) | ||
| Ig strand E | 295..299 | CDD:409460 | 3/3 (100%) | ||
| Ig strand F | 309..314 | CDD:409460 | 3/4 (75%) | ||
| Ig strand G | 322..325 | CDD:409460 | 2/2 (100%) | ||
| Ig4_L1-CAM_like | 334..422 | CDD:409453 | 76/87 (87%) | ||
| Ig strand B | 350..354 | CDD:409453 | 3/3 (100%) | ||
| Ig strand C | 363..367 | CDD:409453 | 3/3 (100%) | ||
| Ig strand E | 387..391 | CDD:409453 | 2/3 (67%) | ||
| Ig strand F | 401..406 | CDD:409453 | 4/4 (100%) | ||
| Ig strand G | 414..417 | CDD:409453 | 2/2 (100%) | ||
| Ig | 428..514 | CDD:472250 | 80/85 (94%) | ||
| Ig strand B | 444..448 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 457..461 | CDD:409353 | 3/3 (100%) | ||
| Ig strand E | 480..484 | CDD:409353 | 3/3 (100%) | ||
| Ig strand F | 494..499 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 507..510 | CDD:409353 | 2/2 (100%) | ||
| Ig_3 | 519..594 | CDD:464046 | 69/74 (93%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 554..556 | 1/1 (100%) | |||
| FN3 | 612..709 | CDD:238020 | 87/96 (91%) | ||
| FN3 | <627..>837 | CDD:442628 | 185/209 (89%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 698..725 | 25/26 (96%) | |||
| fn3 | 824..907 | CDD:394996 | 71/82 (87%) | ||
| FN3 | 918..1003 | CDD:238020 | 69/84 (82%) | ||
| Bravo_FIGEY | 1144..1233 | CDD:464016 | 84/88 (95%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1176..1207 | 26/30 (87%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1226..1257 | 30/30 (100%) | |||
| L1cam | NP_059041.2 | IgI_L1-CAM_like | 35..130 | CDD:409396 | 79/95 (83%) |
| Ig strand A | 35..39 | CDD:409396 | 3/3 (100%) | ||
| Ig strand A' | 44..48 | CDD:409396 | 3/3 (100%) | ||
| Ig strand B | 53..60 | CDD:409396 | 6/6 (100%) | ||
| Ig strand C | 66..71 | CDD:409396 | 3/4 (75%) | ||
| Ig strand C' | 74..76 | CDD:409396 | 0/1 (0%) | ||
| Ig strand D | 83..86 | CDD:409396 | 2/2 (100%) | ||
| Ig strand E | 93..97 | CDD:409396 | 3/3 (100%) | ||
| Ig strand F | 109..117 | CDD:409396 | 6/7 (86%) | ||
| Ig strand G | 120..130 | CDD:409396 | 8/9 (89%) | ||
| Ig | 139..229 | CDD:472250 | 85/89 (96%) | ||
| Ig strand B | 153..157 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 167..171 | CDD:409353 | 3/3 (100%) | ||
| Ig strand E | 190..194 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 205..210 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 221..224 | CDD:409353 | 2/2 (100%) | ||
| Ig3_L1-CAM | 247..329 | CDD:409460 | 73/81 (90%) | ||
| Ig strand B | 259..263 | CDD:409460 | 2/3 (67%) | ||
| Ig strand C | 272..276 | CDD:409460 | 3/3 (100%) | ||
| Ig strand E | 294..298 | CDD:409460 | 3/3 (100%) | ||
| Ig strand F | 308..313 | CDD:409460 | 3/4 (75%) | ||
| Ig strand G | 321..324 | CDD:409460 | 2/2 (100%) | ||
| Ig | 333..421 | CDD:472250 | 76/87 (87%) | ||
| Ig strand B | 349..353 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 362..366 | CDD:409353 | 3/3 (100%) | ||
| Ig strand E | 386..390 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 400..405 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 413..416 | CDD:409353 | 2/2 (100%) | ||
| Ig | 427..513 | CDD:472250 | 80/85 (94%) | ||
| Ig strand B | 443..447 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 456..460 | CDD:409353 | 3/3 (100%) | ||
| Ig strand E | 479..483 | CDD:409353 | 3/3 (100%) | ||
| Ig strand F | 493..498 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 506..509 | CDD:409353 | 2/2 (100%) | ||
| Ig | 515..611 | CDD:472250 | 88/95 (93%) | ||
| Ig strand B | 534..538 | CDD:409353 | 3/3 (100%) | ||
| Ig strand C | 549..553 | CDD:409353 | 3/3 (100%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 553..555 | 1/1 (100%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 562..564 | 0/1 (0%) | |||
| Ig strand E | 573..577 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 587..592 | CDD:409353 | 4/4 (100%) | ||
| Ig strand G | 600..603 | CDD:409353 | 2/2 (100%) | ||
| FN3 | 611..708 | CDD:238020 | 87/96 (91%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 697..724 | 25/26 (96%) | |||
| fn3 | 717..798 | CDD:394996 | 69/80 (86%) | ||
| fn3 | 824..906 | CDD:394996 | 71/81 (88%) | ||
| fn3 | 920..1002 | CDD:394996 | 66/81 (81%) | ||
| Bravo_FIGEY | 1146..1231 | CDD:464016 | 84/88 (95%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1224..1255 | 30/30 (100%) |