DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43163 and gpsm1b

DIOPT Version :9

Sequence 1:NP_001246673.1 Gene:CG43163 / 38966 FlyBaseID:FBgn0262719 Length:2523 Species:Drosophila melanogaster
Sequence 2:NP_001007779.1 Gene:gpsm1b / 493623 ZFINID:ZDB-GENE-110203-5 Length:634 Species:Danio rerio


Alignment Length:814 Identity:185/814 - (22%)
Similarity:298/814 - (36%) Gaps:281/814 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 AFASGLA-QEPSNKQLMAGLVEASLKSPLRAALEPTLQQLRTMQLQESPFVVSSVVGQELLQATQ 218
            |.|:|.| .:|::|:|.:.: |||.   |..|||                      |:.|.:|..
Zfish     2 AQAAGAADSDPASKRLHSRM-EASC---LELALE----------------------GERLCKAGD 40

  Fly   219 YSAAVTVLEAALRIGSCSLKLRGSVFSALSSAHWALNQLDQAIGYMQQDLAVAKSLGDTAGECRA 283
            :.......|||:::|:..||...:::|.|.:|::.|.:..:|:.|.:.||.:|:::||..||.:|
Zfish    41 FKGGTAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYGKAMEYHRHDLTLARTIGDRVGEGKA 105

  Fly   284 HGNLGSAYFSQGAHKEALTAHRYQLVLAMKCKDTQAAAAALTSLGHVYTASGDYPNALASHKQCV 348
            .||||                                                  |.|.      
Zfish   106 SGNLG--------------------------------------------------NTLK------ 114

  Fly   349 QLFKQLGDRLQEAREIGNVGAVYLALGECEAALDCHSQHLRLARKLHDQVEEARAYSNLGSAHHQ 413
                                    .||:.:.|..|..:||.::::..|:|.||||..|:|:..|.
Zfish   115 ------------------------VLGQYDEAAVCCQRHLDISQEQGDKVGEARALYNIGNVFHA 155

  Fly   414 RRQFTQAAACHEQVLRIAQALGDRSMEAAAYAGLGHAARCAGDASASKRFHERQLAMALAARDKL 478
            :.:        :|:..:.|..||...:                                 .|:.|
Zfish   156 KGK--------QQLWGVCQERGDLPPD---------------------------------VRETL 179

  Fly   479 GEGRACSNLGIVYQMLGSHDAALKLHQAHLGIARSLGDRTGMGKAYGNMARMAHMAGSYEAAVKY 543
            ....|      .|:|             :|.:.:.||||...|:|:||:....::.|::..|:|:
Zfish   180 QRATA------FYEM-------------NLSLVKDLGDRAAQGRAFGNLGNTHYLLGNFVEAIKF 225

  Fly   544 HKQELAINQAMNDRSAEAATHGNLAVAYQALGAHDAALTHYRAHLATARSLKDTAGEACALLNLG 608
            |::.|||.:...|::||...:.||..|...||...||..:||..|..:|.|||...||.|..:||
Zfish   226 HRERLAIAKEFGDKAAERRAYSNLGNALIFLGQFSAATEYYRKTLQLSRQLKDQVMEAQACYSLG 290

  Fly   609 NCLSGRQEYEEAVPHYESYLMLAQELGDVAAEGKACHLLGYAHFSLGNYRAAVRYYDQDLALAKD 673
            |..:..||||.|:.::..:|::||||.|...||:||..||..:.||||.|.|:.|..:.|.::::
Zfish   291 NTHTLLQEYERAIDYHLKHLLIAQELNDRVGEGRACWSLGNVYVSLGNLRQALHYSRRHLDISRE 355

  Fly   674 AQHRPNMGRAYCNLGLAHLALGHTAAALECQQLFLAVAHATNQLPA------------------- 719
            ...        ||        |...|.|..::|..|:....::|..                   
Zfish   356 ISD--------CN--------GELTARLNVEELMEALGVKEDELSPTEPHFKLQGARPKLSKKSS 404

  Fly   720 -------KFRA--LGNIGDILI--------------------------RTGSHEEAI-----KLY 744
                   ||.|  .|:..|:.:                          |..|.|:..     |..
Zfish   405 MDSVELWKFSAEKNGDAADVCVSRSSRSLQSAVDTEDITVSVTPTKLPRDPSDEDCFFDLLSKFQ 469

  Fly   745 QRQLALARAAGDRSMEAAACGALGLAHRLMRRWDKAL--GHHTQEL------TLRQELGD----- 796
            ..::...|...|.:.:....||  ..:.|....|.:|  ...|:||      |..:.|.|     
Zfish   470 SSRMDDQRCQLDETPDGEEAGA--DQNTLNDMIDASLLTSPQTEELFDLIASTQSRRLDDQRVNV 532

  Fly   797 --LSGECRAHGHLGAVHMALCS-----------WTNAVKCYQEQLERAQEQRDAAVEAQAHGNLG 848
              |.|....|.:||  |  ||.           :...:||   |..|..:||.:..|....|..|
Zfish   533 SNLPGLRITHNNLG--H--LCGDGDPQEPSDDFFNMLIKC---QSSRIDDQRCSPPEGGPRGPDG 590

  Fly   849 IARLNMAHYEAAIGCLEAQLGTLERVSLPSTQAD 882
                :...:.:.|..::|:....:||.||..|.:
Zfish   591 ----SDEDFFSLIQRVQAKRMDEQRVRLPEDQQE 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43163NP_001246673.1 TPR_11 70..130 CDD:290150
TPR repeat 98..128 CDD:276809
TPR_11 101..164 CDD:290150 4/9 (44%)
TPR repeat 133..161 CDD:276809 3/5 (60%)
TPR repeat 243..269 CDD:276809 7/25 (28%)
TPR repeat 281..311 CDD:276809 5/29 (17%)
TPR_12 282..353 CDD:290160 7/70 (10%)
TPR_12 320..393 CDD:290160 8/72 (11%)
TPR repeat 321..349 CDD:276809 2/27 (7%)
TPR repeat 354..390 CDD:276809 6/35 (17%)
TPR_12 401..473 CDD:290160 10/71 (14%)
TPR repeat 401..429 CDD:276809 7/27 (26%)
TPR_7 403..438 CDD:289919 8/34 (24%)
TPR repeat 441..469 CDD:276809 0/27 (0%)
TPR 467..752 CDD:223533 86/343 (25%)
TPR repeat 482..509 CDD:276809 3/26 (12%)
TPR repeat 522..549 CDD:276809 7/26 (27%)
TPR repeat 561..595 CDD:276809 11/33 (33%)
TPR repeat 600..630 CDD:276809 12/29 (41%)
TPR repeat 642..669 CDD:276809 11/26 (42%)
TPR_7 643..677 CDD:289919 12/33 (36%)
TPR repeat 680..716 CDD:276809 7/35 (20%)
TPR repeat 721..749 CDD:276809 8/60 (13%)
TPR_7 723..758 CDD:289919 9/67 (13%)
TPR repeat 801..829 CDD:276809 9/38 (24%)
TPR_12 841..914 CDD:290160 9/42 (21%)
TPR repeat 841..878 CDD:276809 7/36 (19%)
TPR_12 882..949 CDD:290160 0/1 (0%)
TPR repeat 883..913 CDD:276809 185/814 (23%)
TPR 884..914 CDD:197478
TPR repeat 924..949 CDD:276809
TPR_12 964..1036 CDD:290160
TPR repeat 964..998 CDD:276809
TPR repeat 1004..1032 CDD:276809
TPR repeat 1043..1073 CDD:276809
TPR_12 1044..1112 CDD:290160
TPR_7 1046..1078 CDD:289919
TPR_12 1081..1153 CDD:290160
TPR repeat 1081..1109 CDD:276809
CHAT 1421..1718 CDD:289536
Treacle <1957..2287 CDD:281536
gpsm1bNP_001007779.1 TPR repeat 28..53 CDD:276809 9/46 (20%)
TPR_12 64..135 CDD:290160 26/150 (17%)
TPR 65..95 CDD:197478 9/29 (31%)
TPR repeat 65..91 CDD:276809 7/25 (28%)
TPR repeat 102..132 CDD:276809 14/109 (13%)
TPR_1 104..132 CDD:278916 13/107 (12%)
TPR_12 143..235 CDD:290160 31/151 (21%)
TPR_12 204..275 CDD:290160 23/70 (33%)
TPR repeat 204..231 CDD:276809 7/26 (27%)
TPR_7 205..240 CDD:289919 11/34 (32%)
TPR repeat 236..272 CDD:276809 13/35 (37%)
TPR_12 244..315 CDD:290160 27/70 (39%)
TPR_1 244..272 CDD:278916 10/27 (37%)
TPR_12 283..355 CDD:290160 30/71 (42%)
TPR repeat 283..310 CDD:276809 10/26 (38%)
Cas1_I-II-III <287..>405 CDD:294435 36/133 (27%)
TPR repeat 323..351 CDD:276809 12/27 (44%)
GoLoco 459..480 CDD:280368 2/20 (10%)
GoLoco 510..530 CDD:214645 6/19 (32%)
GoLoco 559..580 CDD:280368 6/23 (26%)
GoLoco 593..614 CDD:280368 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D321819at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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