DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43163 and Ttc12

DIOPT Version :9

Sequence 1:NP_001246673.1 Gene:CG43163 / 38966 FlyBaseID:FBgn0262719 Length:2523 Species:Drosophila melanogaster
Sequence 2:XP_006243066.1 Gene:Ttc12 / 300696 RGDID:1303264 Length:723 Species:Rattus norvegicus


Alignment Length:753 Identity:153/753 - (20%)
Similarity:251/753 - (33%) Gaps:199/753 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTNYENIINLPLNFNANNHAAGNN---ENNAKIAIVGEQ--------LLNK--MSQRDFSENEPE 52
            :.|.:.|.||....|:::......   :...|:.::..:        .|||  :|.....||..|
  Rat    32 LENVDEITNLIQEMNSDDPFIQQKAVLDTEKKLLLMEREQEEDGCRTTLNKTMISPPQAPENANE 96

  Fly    53 CTPELPAA---------------NRALFLEKVRQSNAACQSGDFATAVLLYTDALQLDPGNHILY 102
            ..|:...|               ||.|......:.|.|...||:.||:..|::.|.......:||
  Rat    97 MNPDAFLASVEKDAKERAKRRRENRVLADALKEKGNEAFVKGDYETAIFFYSEGLGKLKDMKVLY 161

  Fly   103 SNRSAALLKQGQFTAALQDATQARDLCPQWPKAYFRQGVALQCLGRYGEALAAFASGLAQEPSNK 167
            :||:.|.:|.|.:..||.|...|........||||..|.|...|..|.::...:..         
  Rat   162 TNRAQAYIKLGDYQKALVDCDWALKCDENCTKAYFHMGKAHLALKNYSKSKECYQK--------- 217

  Fly   168 QLMAGLVEASLKSPLRAAL-EPTLQQLRTMQLQESPFVVSSVVGQELLQATQYSAAVT--VLEAA 229
               .|.:...||:.::..| :.||::...:|.:::         :|.|.:.:.:|..|  :||..
  Rat   218 ---IGEINPKLKAQVKEHLNQVTLREKADLQEKKA---------RESLDSGKNTAMTTRNLLETL 270

  Fly   230 LRIGSCSLKLRGSVFSALSSAHWALNQLDQAIGYMQQDLAVAKSLGDTAGE---CRAHGNLGSAY 291
            .:.|...|...|.:               :.:..|..| ...::|..|.|.   ...|..:....
  Rat   271 SKPGQTPLFYAGGI---------------EILTEMMTD-CTERTLFRTYGGFSIINDHEVIKRCL 319

  Fly   292 FSQGAHKEALTAHRYQLVLAMK-----CKDTQAAAAALTSLGHVYTASGDYPNALASHKQCVQLF 351
            |..|  |:|:  .....|..:|     |.|.:                 :....|.||....:|.
  Rat   320 FLAG--KDAV--EEIVCVSVLKLWQEVCIDNE-----------------ENQRLLLSHPDMAKLL 363

  Fly   352 KQLGDR----LQEAREIGNVGAVYLALGECEAALDCHSQHL---RLARKLHDQVE--EARAYSNL 407
            ....|.    :|:...     |:.|.|.:.:...:...:||   ||...|...::  :.:|.:.:
  Rat   364 PSFMDSRILVIQQQSL-----ALLLQLTQTDNGRNQVIKHLDMTRLCEALLSFLDFSDKKANTAI 423

  Fly   408 G----SAHHQRRQFTQAAACHEQVLRIAQALGDRSMEAAAYAGLGHAARCAGDASASKRFHERQL 468
            |    .|..:|.|....|...:.:..:..|| .|..:..:.:.|.......|:.||........|
  Rat   424 GLFTDLALEERFQVWFHANLPDVLPALTGAL-KREPKLTSPSALCQCIALMGNISAEPTARRHML 487

  Fly   469 AMALAARDKLGEGRACSNL------------GIVYQMLG------------SHDAALKLHQAHLG 509
            |.     ::.|:  ||.:|            .:.|.:||            |...|:|:.:..|.
  Rat   488 AY-----EEFGD--ACLDLLVKCEEDMDLYREVTYTLLGLIMNLCLEVPFLSESWAMKISRKCLS 545

  Fly   510 IARSLGDRTGMGKAYGNMARM----------AHMAGSYEAAVKYHKQ--ELAINQAMNDRSAEAA 562
            :..| .|...:.:|.|.::|.          |..||..:..:|:.|.  ..|...||.       
  Rat   546 LLNS-QDGGILTRAAGVLSRTLSSSQTIVEEALTAGVVKKMIKFLKTGGPTASRYAMK------- 602

  Fly   563 THGNLAV---AYQALGAHDAALTHYRAHLATARSLKDTAGEACALLNLGNCLSGRQEYEEAVPHY 624
               .|||   :|.|.......|......|.|..:.:|......|.|.||||:.        ||..
  Rat   603 ---TLAVCTNSYHAAREEVMRLDKKFNVLMTLLASEDEVVVGNAALCLGNCME--------VPSA 656

  Fly   625 ESYLM------------------LAQELGDVAAEGKAC 644
            .|.|:                  .|.:|....|.||.|
  Rat   657 ASSLLKTDIMRVLLKLAGGDSQETAVQLNAGIALGKLC 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43163NP_001246673.1 TPR_11 70..130 CDD:290150 19/59 (32%)
TPR repeat 98..128 CDD:276809 11/29 (38%)
TPR_11 101..164 CDD:290150 19/62 (31%)
TPR repeat 133..161 CDD:276809 8/27 (30%)
TPR repeat 243..269 CDD:276809 2/25 (8%)
TPR repeat 281..311 CDD:276809 6/29 (21%)
TPR_12 282..353 CDD:290160 13/75 (17%)
TPR_12 320..393 CDD:290160 13/79 (16%)
TPR repeat 321..349 CDD:276809 3/27 (11%)
TPR repeat 354..390 CDD:276809 7/42 (17%)
TPR_12 401..473 CDD:290160 15/75 (20%)
TPR repeat 401..429 CDD:276809 6/31 (19%)
TPR_7 403..438 CDD:289919 8/38 (21%)
TPR repeat 441..469 CDD:276809 4/27 (15%)
TPR 467..752 CDD:223533 51/235 (22%)
TPR repeat 482..509 CDD:276809 9/50 (18%)
TPR repeat 522..549 CDD:276809 8/38 (21%)
TPR repeat 561..595 CDD:276809 8/36 (22%)
TPR repeat 600..630 CDD:276809 10/47 (21%)
TPR repeat 642..669 CDD:276809 2/3 (67%)
TPR_7 643..677 CDD:289919 1/2 (50%)
TPR repeat 680..716 CDD:276809
TPR repeat 721..749 CDD:276809
TPR_7 723..758 CDD:289919
TPR repeat 801..829 CDD:276809
TPR_12 841..914 CDD:290160
TPR repeat 841..878 CDD:276809
TPR_12 882..949 CDD:290160
TPR repeat 883..913 CDD:276809
TPR 884..914 CDD:197478
TPR repeat 924..949 CDD:276809
TPR_12 964..1036 CDD:290160
TPR repeat 964..998 CDD:276809
TPR repeat 1004..1032 CDD:276809
TPR repeat 1043..1073 CDD:276809
TPR_12 1044..1112 CDD:290160
TPR_7 1046..1078 CDD:289919
TPR_12 1081..1153 CDD:290160
TPR repeat 1081..1109 CDD:276809
CHAT 1421..1718 CDD:289536
Treacle <1957..2287 CDD:281536
Ttc12XP_006243066.1 TPR_11 124..189 CDD:290150 19/64 (30%)
TPR repeat 124..152 CDD:276809 7/27 (26%)
TPR repeat 157..187 CDD:276809 11/29 (38%)
TPR_11 160..223 CDD:290150 20/74 (27%)
TPR_1 161..191 CDD:278916 10/29 (34%)
TPR repeat 192..217 CDD:276809 8/24 (33%)
TPR_1 193..224 CDD:278916 9/42 (21%)
ARM 631..723 CDD:237987 17/72 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0548
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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