DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43163 and Gpsm1

DIOPT Version :9

Sequence 1:NP_001246673.1 Gene:CG43163 / 38966 FlyBaseID:FBgn0262719 Length:2523 Species:Drosophila melanogaster
Sequence 2:XP_006233732.1 Gene:Gpsm1 / 246254 RGDID:628682 Length:705 Species:Rattus norvegicus


Alignment Length:430 Identity:132/430 - (30%)
Similarity:219/430 - (50%) Gaps:25/430 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 GEALAAFASGLAQEPSNKQLMAGLVEASLKSPLRAALEPTLQQLRTMQLQ--ESPFVVSSVVGQE 212
            |:.||.   .||::...|.:........|..|:...|...:|::|.:|.:  |:..:..::.|:.
  Rat     8 GQPLAL---SLAEKAVCKVVYGAPRPRPLLLPVGLELWLYVQKMRNLQRKRMEASCLELALEGER 69

  Fly   213 LLQATQYSAAVTVLEAALRIGSCSLKLRGSVFSALSSAHWALNQLDQAIGYMQQDLAVAKSLGDT 277
            |.:|..:.|.|...|||:::|:..||...:::|.|.:|::.|.:..:|:.:.:.||.:|:::||.
  Rat    70 LCKAGDFKAGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIGDR 134

  Fly   278 AGECRAHGNLGSAYFSQGAHKEALTAHRYQLVLAMKCKDTQAAAAALTSLGHVYTASG------- 335
            .||.:|.||||:.....|...||:...:..|.:|.:..|....|.||.::|:||.|.|       
  Rat   135 MGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEARALYNIGNVYHAKGKQLSWNA 199

  Fly   336 ---------DYPNAL--AS--HKQCVQLFKQLGDRLQEAREIGNVGAVYLALGECEAALDCHSQH 387
                     |....|  ||  :::.:.|.|:||||..:.|..||:|..:..||....|...|.:.
  Rat   200 AQDPGHLPPDVRETLHRASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKER 264

  Fly   388 LRLARKLHDQVEEARAYSNLGSAHHQRRQFTQAAACHEQVLRIAQALGDRSMEAAAYAGLGHAAR 452
            |.:|::..|:..|.|||||||:||....:|..||..:::.|::::.|.|:::||.|...||:...
  Rat   265 LAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNTYT 329

  Fly   453 CAGDASASKRFHERQLAMALAARDKLGEGRACSNLGIVYQMLGSHDAALKLHQAHLGIARSLGDR 517
            ...|...:..:|.|.|.:|....|::||||||.:||..|..:||...||...:.||.|::.:|||
  Rat   330 LLQDYERAAEYHLRHLVIAQELADRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDR 394

  Fly   518 TGMGKAYGNMARMAHMAGSYEAAVKYHKQELAINQAMNDR 557
            .|...|..|:|.:....|...:.....|.:||..:|...|
  Rat   395 NGELTARMNIAHLQLALGRLTSPAAAEKPDLAGYEAQGAR 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43163NP_001246673.1 TPR_11 70..130 CDD:290150
TPR repeat 98..128 CDD:276809
TPR_11 101..164 CDD:290150 5/13 (38%)
TPR repeat 133..161 CDD:276809 3/10 (30%)
TPR repeat 243..269 CDD:276809 6/25 (24%)
TPR repeat 281..311 CDD:276809 9/29 (31%)
TPR_12 282..353 CDD:290160 24/90 (27%)
TPR_12 320..393 CDD:290160 28/92 (30%)
TPR repeat 321..349 CDD:276809 12/47 (26%)
TPR repeat 354..390 CDD:276809 13/35 (37%)
TPR_12 401..473 CDD:290160 25/71 (35%)
TPR repeat 401..429 CDD:276809 12/27 (44%)
TPR_7 403..438 CDD:289919 14/34 (41%)
TPR repeat 441..469 CDD:276809 7/27 (26%)
TPR 467..752 CDD:223533 32/91 (35%)
TPR repeat 482..509 CDD:276809 11/26 (42%)
TPR repeat 522..549 CDD:276809 5/26 (19%)
TPR repeat 561..595 CDD:276809
TPR repeat 600..630 CDD:276809
TPR repeat 642..669 CDD:276809
TPR_7 643..677 CDD:289919
TPR repeat 680..716 CDD:276809
TPR repeat 721..749 CDD:276809
TPR_7 723..758 CDD:289919
TPR repeat 801..829 CDD:276809
TPR_12 841..914 CDD:290160
TPR repeat 841..878 CDD:276809
TPR_12 882..949 CDD:290160
TPR repeat 883..913 CDD:276809
TPR 884..914 CDD:197478
TPR repeat 924..949 CDD:276809
TPR_12 964..1036 CDD:290160
TPR repeat 964..998 CDD:276809
TPR repeat 1004..1032 CDD:276809
TPR repeat 1043..1073 CDD:276809
TPR_12 1044..1112 CDD:290160
TPR_7 1046..1078 CDD:289919
TPR_12 1081..1153 CDD:290160
TPR repeat 1081..1109 CDD:276809
CHAT 1421..1718 CDD:289536
Treacle <1957..2287 CDD:281536
Gpsm1XP_006233732.1 TPR repeat 63..88 CDD:276809 8/24 (33%)
TPR_12 99..170 CDD:290160 22/70 (31%)
TPR repeat 100..126 CDD:276809 6/25 (24%)
TPR repeat 137..167 CDD:276809 10/29 (34%)
TPR_1 138..170 CDD:278916 10/31 (32%)
TPR_12 178..270 CDD:290160 28/91 (31%)
TPR_12 239..310 CDD:290160 25/70 (36%)
TPR repeat 239..266 CDD:276809 8/26 (31%)
TPR repeat 271..307 CDD:276809 15/35 (43%)
TPR_12 279..350 CDD:290160 25/70 (36%)
TPR_1 279..307 CDD:278916 13/27 (48%)
TPR_12 318..390 CDD:290160 26/71 (37%)
TPR repeat 318..345 CDD:276809 7/26 (27%)
TPR_7 320..354 CDD:289919 8/33 (24%)
TPR repeat 352..386 CDD:276809 15/33 (45%)
GoLoco 526..547 CDD:280368
GoLoco 579..599 CDD:280368
GoLoco 626..648 CDD:214645
GoLoco 661..682 CDD:280368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D321819at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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