DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and VIM3

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_198771.1 Gene:VIM3 / 833951 AraportID:AT5G39550 Length:617 Species:Arabidopsis thaliana


Alignment Length:487 Identity:93/487 - (19%)
Similarity:143/487 - (29%) Gaps:166/487 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   369 CKICAENDKDIRIEPCGHLLCTPCLTSWQVDSEGQG---CPFCRAEIKGTEQIVVDAFDPRKQHN 430
            |.||.:..:.....||||..|..|...|.|   |||   |..||::|.                 
plant   129 CSICIQLPERPITTPCGHNFCLKCFEKWAV---GQGKLTCMICRSKIP----------------- 173

  Fly   431 RNVTNGRQQQQEEDDTEDIGDFNIATSSLHAL------STSSTVAAEKHSPHTSPRLGRRSTTPS 489
            |:|....:             .|:|..|...|      |..:|.|...|......|..:..||..
plant   174 RHVAKNPR-------------INLALVSAIRLANVTKCSVEATAAKVHHIIRNQDRPEKAFTTER 225

  Fly   490 LMAVQNDLYAGGTPTLSLPSSSCSSIAAASTSSSSSLASVATVAASTSSSQHQQPQ--------- 545
            .:.......|.|...:::|......|.|     .:.:.....|....|....|:.:         
plant   226 AVKTGKANAASGKFFVTIPRDHFGPIPA-----ENDVTRKQGVLVGESWEDRQECRQWGAHFPHI 285

  Fly   546 -----PSAPPASAVLSNGGGG------------GGGGGASSSQKNTNRMSAPLIGSCVANSTYGQ 593
                 .||..|.:|..:||..            |.||...|..|..|:                 
plant   286 AGIAGQSAVGAQSVALSGGYDDDEDHGEWFLYTGSGGRDLSGNKRINK----------------- 333

  Fly   594 KLPQNCSHSSTSSSSDNASSSSSYAILQNLHDT-------GTPATAA-------AVVAPPLPPRK 644
                       ..|||.|        .:|::::       |.|....       :..||....|.
plant   334 -----------KQSSDQA--------FKNMNESLRLSCKMGYPVRVVRSWKEKRSAYAPAEGVRY 379

  Fly   645 SSPGVETPSKATAPPPPSSSKSIDN---IQCSLDNVPPQTTAP-----PIP-PHVSPSVDTLAED 700
            .  ||....|..:......|..:..   ::|  ||.|...|:.     |.| |:| |.::|.|:.
plant   380 D--GVYRIEKCWSNVGVQGSFKVCRYLFVRC--DNEPAPWTSDEHGDRPRPLPNV-PELETAADL 439

  Fly   701 LMRQQLIATS----------TTSPVLSLLDEDIVEVGPAETISGVIDTRPLEARGVTLCRQ---- 751
            .:|::..:..          ..||.:|.:..|..|....:.....:..|.|:.....:||:    
plant   440 FVRKESPSWDFDEAEGRWKWMKSPPVSRMALDPEERKKNKRAKNTMKARLLKEFSCQICREVLSL 504

  Fly   752 ---------------DSASSHYTQLCTTSSGG 768
                           ::..:..|||...|:||
plant   505 PVTTPCAHNFCKACLEAKFAGITQLRERSNGG 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176
zf-C3HC4_3 367..415 CDD:290631 18/48 (38%)
UBA_Cbl_like 834..873 CDD:270503
VIM3NP_198771.1 PHD 14..59 CDD:214584
PLN03208 98..>156 CDD:178747 9/26 (35%)
RING_Ubox 129..169 CDD:388418 15/42 (36%)
SAD_SRA 247..409 CDD:366960 32/206 (16%)
PEX10 <448..519 CDD:227861 9/70 (13%)
RING_Ubox 493..555 CDD:388418 8/44 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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