DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and AT5G03450

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_195965.2 Gene:AT5G03450 / 831835 AraportID:AT5G03450 Length:630 Species:Arabidopsis thaliana


Alignment Length:498 Identity:105/498 - (21%)
Similarity:161/498 - (32%) Gaps:107/498 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 NPDLSSAVQSPTEDHITVTQEQYELYCEMGSTFQL-CKICAE-----NDKDIRIEPCGHLLCTPC 392
            |.:.|..|.|.:..    :||..|  .:.|.|..| |.||.|     ....:...|||||....|
plant    90 NQNRSQGVCSSSSG----SQEDVE--WKQGDTEGLSCSICMEVWTSGGQHQVCCLPCGHLYGYSC 148

  Fly   393 LTSW-QVDSEGQGCPFC-------------------------------RAEIKGTEQIVVDAFDP 425
            :..| |....|..||.|                               .|:::..||  ..|...
plant   149 INKWFQQRRSGGKCPLCNKICSLRDVRKIYASRVAAVDDEAHKRILFLEAKLRSIEQ--KTASWS 211

  Fly   426 RKQHNRNVTNGRQQQQEEDDTEDIGDFNIATSSLHALSTSSTVAAEKHSPHTSPRLGRRSTTPSL 490
            .|:....:|....:.:.....:.|.  |:.:::..:.|.|:..:.||:.|..:........:||.
plant   212 NKEVQWKITEAELRLEVTKLKKKIA--NMESTTKGSQSQSNVASQEKYIPAHNIYQEHHGQSPSC 274

  Fly   491 -MAVQNDLYA---------GGTPTLSLPSSSCSSIAAASTSSSSSLASVATV-------AASTSS 538
             ...|.||..         ||...| |.:...|.:......:..||.|...:       ......
plant   275 SFRHQGDLLINGGRIFDIDGGRQIL-LYARRLSGVGGTFVLTQMSLHSPCEIDDILLPRTTRAIK 338

  Fly   539 SQHQQPQPSAPPASAVLSNGGGGGGGGGASSSQKNTNRMSAPLIGSCVANSTYGQKLPQNCSHSS 603
            ..|..|.          :||....|..|...|          :|.....|:.....||.    :.
plant   339 DLHLSPH----------NNGLAVFGSLGKKLS----------VISLESHNTVLSYDLPA----AP 379

  Fly   604 TSSSSDNASSSSSYAILQN----LHD----TGTPATAAAVVAPPLPPRKSSPGVETPSKATAPPP 660
            .|.|.|..||...||.|||    :.|    ||..|:...:...|:.......|..||:.......
plant   380 WSCSWDLKSSHHIYAGLQNGMVLIFDMRQTTGPFASMTGLTTNPVHTVHHLSGNSTPTSDVRTLL 444

  Fly   661 PSSSKSIDNIQCSLDNVPPQTTAPPIPPHV-SPSVDTLAEDLMRQQLIATSTTSPVLSLLDEDIV 724
            .:||..:    |.. |:.....:|.:.... :|.|...:....|...|..|....|.|  .:|.|
plant   445 SASSIGL----CQW-NISGSEGSPSLVSETGNPGVCISSSYCPRSNHIVASYRPRVGS--SDDTV 502

  Fly   725 EVGPAETISGVIDTRPLEARGVTLC-RQDSASSHYTQLCTTSS 766
            ...|:.|.:||.::......|..:| ::....|:|.:|.:|.:
plant   503 PTQPSLTQTGVSNSNSNGVDGFHVCHKRRGVDSYYQKLSSTQA 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176 2/5 (40%)
zf-C3HC4_3 367..415 CDD:290631 18/85 (21%)
UBA_Cbl_like 834..873 CDD:270503
AT5G03450NP_195965.2 mRING-C3HGC3_RFWD3 116..166 CDD:319364 16/49 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.