DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and RMA1

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001319862.1 Gene:RMA1 / 825654 AraportID:AT4G03510 Length:249 Species:Arabidopsis thaliana


Alignment Length:315 Identity:58/315 - (18%)
Similarity:97/315 - (30%) Gaps:123/315 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 LYPDG----QAYNPDLSSAVQSPTEDHITVTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGH 386
            ||.:|    ::..|: ...|..|::|    |.:         |.|. |.||.::.::..:..|||
plant    16 LYGEGAFCFKSKKPE-PITVSVPSDD----TDD---------SNFD-CNICLDSVQEPVVTLCGH 65

  Fly   387 LLCTPCLTSW-QVDS--------EGQGCPFCRAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQE 442
            |.|.||:..| .|.|        ..:.||.|::::  :...:|..:.          .||...||
plant    66 LFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKV--SHSTLVPLYG----------RGRCTTQE 118

  Fly   443 EDDTEDIGDFNIATSSLHALSTSSTVAAEKHSPHTSPRLGRRSTTPSLMAVQNDLYAGGTPTLSL 507
            |.                           |:|....|                   .|....|.:
plant   119 EG---------------------------KNSVPKRP-------------------VGPVYRLEM 137

  Fly   508 PSSSCSSIAAASTSSSSSLASVATVAASTSSSQHQQPQPSAPPASAVLSNGGGGGGGGGASSSQK 572
            |:|..:|                |....:.......||....|.|.|:|:               
plant   138 PNSPYAS----------------TDLRLSQRVHFNSPQEGYYPVSGVMSS--------------- 171

  Fly   573 NTNRMSAPL------IGSCVANSTYGQKLPQNCSHSSTSSSSDNASSSSSYAILQ 621
            |:...||.|      :|..||...:|.::....::..|.:.:..:.......|:|
plant   172 NSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQ 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176 4/17 (24%)
zf-C3HC4_3 367..415 CDD:290631 16/56 (29%)
UBA_Cbl_like 834..873 CDD:270503
RMA1NP_001319862.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.