DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and Hrd1A

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_188230.1 Gene:Hrd1A / 820854 AraportID:AT3G16090 Length:492 Species:Arabidopsis thaliana


Alignment Length:285 Identity:61/285 - (21%)
Similarity:89/285 - (31%) Gaps:104/285 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 EMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVDSEGQGCPFCRAEIKGTEQIVVDAFDP 425
            |:.::...|.||.|...:.:...||||....||.||.  ...|.||.|||.:...|         
plant   284 ELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWL--ERQQTCPTCRALVVPPE--------- 337

  Fly   426 RKQHNRNVTNGRQQQQEEDDTEDIGDFNIATSSLHALSTSSTVAAEKHSPHTSPRLGRRSTTPSL 490
                  |.|:....|:|                ||..|...|                       
plant   338 ------NATSAAPGQRE----------------LHQGSQQGT----------------------- 357

  Fly   491 MAVQNDLYAGGTPTLSLPSSSCSSIAAASTSSSSSLASVATVAASTSSSQHQQPQPSAPPASAVL 555
                                      ::|.:..|.::|.|.|:.::.|..|.:.|.:|..||.. 
plant   358 --------------------------SSSGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVY- 395

  Fly   556 SNGGGGGGGGGASSSQKNTNRMSAPLIGSCVANSTYGQKLPQN-----CSH-----SSTSSSSDN 610
                    |........||...|:.:.|:...::...|.|||:     .||     |.|......
plant   396 --------GKSMVYPSANTVAWSSGVPGTEQVSTEPDQTLPQHNLPVENSHAYANMSETKLEEMR 452

  Fly   611 ASSSSSYAILQN-LH--DTGTPATA 632
            .|..:...||:| ||  :|..|.:|
plant   453 KSLETHLEILRNRLHFLETRKPESA 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176
zf-C3HC4_3 367..415 CDD:290631 18/47 (38%)
UBA_Cbl_like 834..873 CDD:270503
Hrd1ANP_188230.1 HRD1 3..386 CDD:227568 35/183 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.