DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and AT2G42030

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_181733.1 Gene:AT2G42030 / 818803 AraportID:AT2G42030 Length:425 Species:Arabidopsis thaliana


Alignment Length:320 Identity:83/320 - (25%)
Similarity:121/320 - (37%) Gaps:77/320 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 EDHITVTQEQYELYCEMGS--TFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVDSEGQGCPFC 408
            ||:  ||:|:.::...:||  :|..|.||.:..||..:..||||.|..||..|...||.:.||.|
plant   118 EDN--VTEEKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAKECPVC 180

  Fly   409 RAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQEEDDTEDIGDFNIAT--SSLHALSTSSTVAAE 471
            :.|:.      |....|        ..||..|:.|  :|::.:..|.:  .:....|..:|:...
plant   181 KGEVS------VKTVTP--------IYGRGIQKRE--SEEVSNTKIPSRPQARRTESLRTTLNRS 229

  Fly   472 KHSP-----HTSPRLGRRSTT------PSL---------MAVQN-----------------DLYA 499
            .|.|     |...||.|.|:|      |||         .|.:|                 ||..
plant   230 GHIPTEIFRHLQDRLERESSTGERRARPSLNRFMTSRGVRAEENQSSEALVEPSSDEINDIDLIL 294

  Fly   500 GGTPTLSLPSSSCSSIAAASTS----------SSSSLASVATVAAS---TSSSQHQQPQPSAPPA 551
            ...|.....:.:.||..|.:|.          ||.:|:|...:|.:   |.:....|.|.|:||.
plant   295 NNAPENEEENENLSSSRALATQRRWAQMYGRVSSFTLSSAERLADTYLITHALGRNQEQNSSPPV 359

  Fly   552 SAVLSNGGGGGGGGGASSSQKNTNRMSAPLIGSCVANSTYGQ-KLPQNCSHSSTSSSSDN 610
            .....:......|...|.||..|    |..|.|.:..||... :..:|.|..|...|:|:
plant   360 GVEDRDSFSSIVGVINSESQVET----AAEINSMLTVSTSSSVRRHENSSRVSDVDSADS 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176
zf-C3HC4_3 367..415 CDD:290631 19/47 (40%)
UBA_Cbl_like 834..873 CDD:270503
AT2G42030NP_181733.1 PLN03208 124..>214 CDD:178747 31/105 (30%)
RING-HC_AtRMA_like 139..182 CDD:319659 18/42 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.