DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbl and mib1

DIOPT Version :9

Sequence 1:NP_648224.1 Gene:Cbl / 38961 FlyBaseID:FBgn0020224 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001123407.1 Gene:mib1 / 100170182 XenbaseID:XB-GENE-1001395 Length:1010 Species:Xenopus tropicalis


Alignment Length:217 Identity:46/217 - (21%)
Similarity:75/217 - (34%) Gaps:79/217 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 YVTAEGEILQTIPQNK-----------SLCQALLDGHREGFYLYPDGQ--AYNPDLSS------- 339
            ::.|.|..| ||...|           :||:||...|:|    ...||  :::|.:.|       
 Frog   758 FLAANGADL-TIRNKKGQSPLDLCPDPNLCKALAKCHKE----KSSGQVGSHSPSMISNDSETLE 817

  Fly   340 -----------------------AVQSPTEDHITVTQEQYELYCEMGSTFQLCKICAENDKDIRI 381
                                   ::.||......:.:||    .:..:..:.|.:|::....:..
 Frog   818 ECMVCSDLKRDTLFGPCGHIATCSLCSPRVKKCLICKEQ----VQSRTKIEECVVCSDKKAAVLF 878

  Fly   382 EPCGHL-LCTPCLTSWQVDSEGQGCPFCRAEI------------KGTEQIV-------VDAFDPR 426
            :||||: .|..|.      |..:.|..|||.:            ||||.:.       :.|....
 Frog   879 QPCGHMCACENCA------SLMKKCVQCRAVVERRVPFVMCCSGKGTEDVTDDIAGGNIQALQKD 937

  Fly   427 KQH-NRNVTNGRQQQQEEDDTE 447
            |.: |.|....:.|||.:|..|
 Frog   938 KDNTNVNADVQKLQQQLQDIKE 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CblNP_648224.1 Cbl_N 42..163 CDD:280432
Cbl_N2 167..250 CDD:280857
SH2_Cbl-b_TKB 244..340 CDD:198176 16/87 (18%)
zf-C3HC4_3 367..415 CDD:290631 14/60 (23%)
UBA_Cbl_like 834..873 CDD:270503
mib1NP_001123407.1 MIB_HERC2 15..71 CDD:369043
ZZ_Mind_bomb 83..127 CDD:239079
MIB_HERC2 154..218 CDD:369043
SH3_15 248..311 CDD:375773
SH3_15 333..397 CDD:375773
PHA03095 439..>710 CDD:222980
ANK repeat 464..527 CDD:293786
ANK repeat 529..560 CDD:293786
ANK repeat 562..593 CDD:293786
ANK repeat 595..629 CDD:293786
ANK repeat 631..663 CDD:293786
ANK repeat 665..696 CDD:293786
Ank_2 670..770 CDD:372319 5/12 (42%)
RING1-HC_MIB1 818..854 CDD:319638 2/35 (6%)
RING-HC finger (C3HC4-type) 819..853 CDD:319638 2/33 (6%)
RING2-HC_MIB1 865..901 CDD:319639 10/41 (24%)
RING-HC finger (C3HC4-type) 866..900 CDD:319639 10/39 (26%)
RING3-HC_MIB1 962..1003 CDD:319641
RING-HC finger (C3HC4-type) 963..995 CDD:319641
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.