DRSC/TRiP Functional Genomics Resources

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Protein Alignment mkg-p and usip-1

DIOPT Version :9

Sequence 1:NP_001286981.1 Gene:mkg-p / 38955 FlyBaseID:FBgn0035889 Length:659 Species:Drosophila melanogaster
Sequence 2:NP_506056.1 Gene:usip-1 / 179670 WormBaseID:WBGene00014124 Length:662 Species:Caenorhabditis elegans


Alignment Length:576 Identity:118/576 - (20%)
Similarity:200/576 - (34%) Gaps:209/576 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FRSMQDCLAHELIKHASKPQKQLRQRLNAITKLFNSAQSQSERQE-LREALEWSESGGHLCTVLN 92
            || :||.:  :.:| .|:|.....:.|..:|...  .|...||.: |.:...:.|.|  :..::.
 Worm   106 FR-LQDAI--DFMK-TSQPHFNNDELLEVLTMAI--CQELPERLKILEDGFSFIEQG--VSELIQ 162

  Fly    93 FFACDLENMKTCFGHVRNCIEKEMRGRVRVFPFGSLVTGLALK-ESDIDLFLEP--------NGN 148
            ..||::                          |||..:.:... .||||:.:|.        :.|
 Worm   163 NSACEM--------------------------FGSFASPVRRNGYSDIDINVESVSAPGQRVSTN 201

  Fly   149 QPPLFHNQLYNK----TSHFLRRS---------------KCFAD------VFTIRH--ASVPIIR 186
            ..||  |::...    .:|.|.:|               :||.:      .|.:|.  |..|||.
 Worm   202 VRPL--NEVVANPKCLITHPLTKSELETYPQEEIIKILYRCFNENSAFKTKFEMRFLPARTPIIV 264

  Fly   187 CKH-QLTGLNI--DINMSNPNSIYNSRFVGELMFRNE----RIRELCLFLKIWAKKLKLIS---- 240
            .|: ::.|:|:  |:::.|..|:..:..:.|.:.:::    |::...:|:..|||..||:|    
 Worm   265 FKNIEVEGMNVSYDLSVHNQISVEKASLLHEFIVKDKSKGSRMKNAMMFIVHWAKSNKLLSGDYP 329

  Fly   241 ------HGGMTSYCLISLII--VNLQVNR--LVPSVKELQSLCPPVILSGVNYAYSLDLTPPIPA 295
                  ...:.||.:..|:|  |....|:  :.|..|.         .|.|| .|:.|       
 Worm   330 EEKLEVKTKLNSYIINQLVIHFVQAATNKVHVNPQAKR---------DSRVN-EYNFD------- 377

  Fly   296 RLTTL--DLLKNF---FIYYCTVNFDKSVLSPFLGGCVDKETTLGMPGGFPEYDEQQKLVHDAIG 355
               ||  |..|.|   |.||  .|||.:..:.:....:.|:|.....||..|             
 Worm   378 ---TLFGDYCKFFRELFKYY--ANFDFTNKAIYGKKAMQKKTLSSAHGGVEE------------- 424

  Fly   356 APPDAFQLDRAMCVQDPFELSRNVAKSVS------ISNLCYFRQCLVLAAQACSDQELTSQPEKL 414
            :|         :.:.||.:::.|::..|:      ::.|  .|..|.:..|.             
 Worm   425 SP---------LMLMDPMDITHNISAKVTEDAVKLLNGL--IRNALFILKQN------------- 465

  Fly   415 YDYLLFGLADKLVADKIVADKR-----SERATPRKQQKIENAHVQPPIVDETQE------TKVAE 468
            :.::.:.|....:|..::..:.     |.|.|...:.  :...||.|.|..|..      |:|..
 Worm   466 HFHINYLLETNTMATMLMKSREPKISISTRVTDGAEH--QYLSVQLPAVVITSSDLFLLLTRVLR 528

  Fly   469 VGVCG-----------TPP----LVRS-----------------HVITPTTNDVKC 492
            ..||.           ||.    ||.|                 |.:||...||.|
 Worm   529 FNVCPNEQGPSVVDLCTPTGAIFLVTSRAWVGRRNTKRALKNSRHDLTPLQIDVMC 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mkg-pNP_001286981.1 NT_PAP_TUTase 104..216 CDD:143392 30/150 (20%)
usip-1NP_506056.1 NT_Pol-beta-like 142..297 CDD:416390 36/184 (20%)
PAP_assoc 382..437 CDD:397761 17/78 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12271
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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